Non-Coding RNA Search

Ss1.1-ruio03_p23.5

Sequence:


               
               AATTTAAAAGAAAAGAATCTGAAGAAAAAGTGTACCAGTAATTTGCTGAAGGTACAGGAT
CACAGTTCGTTTCCTTTAAGTCCCTTTTTTCTAGTGTGCCCTAAAATTAGTGCTCTCTGA
GCAGGGATGAAACCTGTCATAGTTAAGGGGAAACTATATATACATACACGTATATGTTTT
CTTCATGAGCAATATGGCAGTAGGAAACTTAAAGGTTAATTTAAGCTTTGAATGTTCGTC
TTCTAGTGTCAAGATGGAGCCATCTGGAAAATGTTAACCTTTGTTGCCATATCATTGCAG
AGTAAGTAGACAGGAAACAATACTTACAAGGTAAAAATACAGAACAATTATAATGCTTAC
AGTGAGTTAAATATTTAGACTATTACTGTTCCAATGGTTTAATGAGGATCTTGAAATAAA
TTCTGAAGTCTTCCAATTTTTACACTTACTGGAGGGGTCCCTGCATTCTGTCAAATTTTA
TTTAAATCTCTTATTTTGTGCATAAATGTTGAAATTTCCAAAAATGAAATGTTAACTCTC
TTATTTTTACCTTTTATTAAATTTAATACAAAATATGACCAGAGTAGTTTAAAAGTATTT
TGCATTATTTGCAGTAGCATGTTATTGGCCCTGCTCAAAGGGCAGATTTTAAAAATTCAA
TTTGGGTGAAAGATTTGCTAGTTTTCCAGAAAGATTTGCTGTCTTAAACTCAACATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTAAAAGAAAAGAATCTGAAGAAAAAGTGTACCAGTAATTTGCTGAAGGTACAGGAT
CACAGTTCGTTTCCTTTAAGTCCCTTTTTTCTAGTGTGCCCTAAAATTAGTGCTCTCTGA
GCAGGGATGAAACCTGTCATAGTTAAGGGGAAACTATATATACATACACGTATATGTTTT
CTTCATGAGCAATATGGCAGTAGGAAACTTAAAGGTTAATTTAAGCTTTGAATGTTCGTC
TTCTAGTGTCAAGATGGAGCCATCTGGAAAATGTTAACCTTTGTTGCCATATCATTGCAG
AGTAAGTAGACAGGAAACAATACTTACAAGGTAAAAATACAGAACAATTATAATGCTTAC
AGTGAGTTAAATATTTAGACTATTACTGTTCCAATGGTTTAATGAGGATCTTGAAATAAA
TTCTGAAGTCTTCCAATTTTTACACTTACTGGAGGGGTCCCTGCATTCTGTCAAATTTTA
TTTAAATCTCTTATTTTGTGCATAAATGTTGAAATTTCCAAAAATGAAATGTTAACTCTC
TTATTTTTACCTTTTATTAAATTTAATACAAAATATGACCAGAGTAGTTTAAAAGTATTT
TGCATTATTTGCAGTAGCATGTTATTGGCCCTGCTCAAAGGGCAGATTTTAAAAATTCAA
TTTGGGTGAAAGATTTGCTAGTTTTCCAGAAAGATTTGCTGTCTTAAACTCAACATTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-289, + strand, RNAz p=0.977546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-289, + strand, RNAz p=0.977546

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003478, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003478, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-720, gnl|bosTau2|chr15 (6000208-5999471)
               

               
               1-720, gnl|Hg17|chr11 (107482610-107483353)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr15 (6000208-5999471)
               

               
               1-720, gnl|Hg17|chr11 (107482610-107483353)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               kid (0.259471)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	1-720, gnl\|bosTau2\|chr15 (6000208-5999471)
	1-720, gnl\|Hg17\|chr11 (107482610-107483353)

	kid (0.259471)
	mgm (0.180343)
	rec (0.17307)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	sug (0.127291)
	tra (0.123092)