Non-Coding RNA Search

Ss1.1-ruio04_c6.5

Sequence:


               
               GTTCTCCACTCTATAGTTTTATAAAGGAAGGAAAATTGAATTATGAAGGACTTGCCATAG
GAAAGGTAAGCGCTTCCTTCCTCGTTTTTAGACGGCGGACTTCGTCCGTTCATTGTAAAG
TGAGCACAGTCATCTCAGGGCTGTTTGAAAACCAGCACCCTTGCTTGACCAAGCTGCGAT
GCTTGTCCACAGCTGCCCACAAGTAATCATAGTCACTTGAGTGAATTTCATGTTTTCCAT
CCATTTGTGACAACATTCTGCTTGGAGAAATTGACAGGTGGCAAAGAATTCAGAAAGGGG
GAGAAGAAGAGAAGTAAGAGCCTTGGTCTACACGAGTGCTTCATAAAGAAGGAGCCACTC
ACACGGTAGCAGAATAGAATTCTGAATGCTGGATGTGGACAGTACAGTTGACTGTTTACT
TAGATCAAGTTTTCCTTTACTCAGGGCTGAATATTTTAATTCTTTAGCTGAGTGTAATTT
ATCCCATGTTTTTATTTTCATTGTATTTTGTTCTGCTTACTTGAGATCATTTGATCTTTG
GTATGTTAACCAAAATAAGTTCTCTACCACTGAGTTTTGAGTGATAGTTTAAAATTTTAT
GAGAGTTGATCTCTGTTAGTATTTTATAAAACAGGAACTGTATTGCAGGTAGCAAAAAAA
GCAGCTTTCTTGGTCCCAAGCTATATATTAGATCATTTAGCTGTCCAAATCAGAGAAAAA
CATACATATGAAAAGAGCACCATTTTCATGTAAATAGTGTTTCTAAATTATATTTCAATG
AGATTTTATAGGCACAAATTATCATTTAATATAATTAATAAAGGGTAGTATTTACCATTC
TTGGATTCCCTTTTCTTTAAGAAACAATATATAAAACTATTAAAAATCTATTCACCTAAG
ATACCTGTTGAAATTTTGTTTAGGTATCTGGCCAGGAACAGTCTTCACGGGGACAAAGAA
TTTTATCTATTCCAATTTGGCCCCCAAACCTAGGTATCTCACAGAACTGTGTGTATGAGG
TACAACAGGTACCCAAAGTAGAAAAGACAGGTAAGTGTTTGCAATACATTCGGGCAGTCT
TAATGTAGTGTTCCTTTGGAGACAAAAAATTAAATTTTTAAAGGGATAACATCTCAGTGA
TGGATATTCACATATAAAAACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTCCACTCTATAGTTTTATAAAGGAAGGAAAATTGAATTATGAAGGACTTGCCATAG
GAAAGGTAAGCGCTTCCTTCCTCGTTTTTAGACGGCGGACTTCGTCCGTTCATTGTAAAG
TGAGCACAGTCATCTCAGGGCTGTTTGAAAACCAGCACCCTTGCTTGACCAAGCTGCGAT
GCTTGTCCACAGCTGCCCACAAGTAATCATAGTCACTTGAGTGAATTTCATGTTTTCCAT
CCATTTGTGACAACATTCTGCTTGGAGAAATTGACAGGTGGCAAAGAATTCAGAAAGGGG
GAGAAGAAGAGAAGTAAGAGCCTTGGTCTACACGAGTGCTTCATAAAGAAGGAGCCACTC
ACACGGTAGCAGAATAGAATTCTGAATGCTGGATGTGGACAGTACAGTTGACTGTTTACT
TAGATCAAGTTTTCCTTTACTCAGGGCTGAATATTTTAATTCTTTAGCTGAGTGTAATTT
ATCCCATGTTTTTATTTTCATTGTATTTTGTTCTGCTTACTTGAGATCATTTGATCTTTG
GTATGTTAACCAAAATAAGTTCTCTACCACTGAGTTTTGAGTGATAGTTTAAAATTTTAT
GAGAGTTGATCTCTGTTAGTATTTTATAAAACAGGAACTGTATTGCAGGTAGCAAAAAAA
GCAGCTTTCTTGGTCCCAAGCTATATATTAGATCATTTAGCTGTCCAAATCAGAGAAAAA
CATACATATGAAAAGAGCACCATTTTCATGTAAATAGTGTTTCTAAATTATATTTCAATG
AGATTTTATAGGCACAAATTATCATTTAATATAATTAATAAAGGGTAGTATTTACCATTC
TTGGATTCCCTTTTCTTTAAGAAACAATATATAAAACTATTAAAAATCTATTCACCTAAG
ATACCTGTTGAAATTTTGTTTAGGTATCTGGCCAGGAACAGTCTTCACGGGGACAAAGAA
TTTTATCTATTCCAATTTGGCCCCCAAACCTAGGTATCTCACAGAACTGTGTGTATGAGG
TACAACAGGTACCCAAAGTAGAAAAGACAGGTAAGTGTTTGCAATACATTCGGGCAGTCT
TAATGTAGTGTTCCTTTGGAGACAAAAAATTAAATTTTTAAAGGGATAACATCTCAGTGA
TGGATATTCACATATAAAAACATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               889-1008, - strand, RNAz p=0.991494

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               889-1008, - strand, RNAz p=0.991494

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               891-1008, DB154196 THYMU3 Homo sapiens cDNA clone THYMU3032080 5', mRNA 
(dbj|DB154196.1|), blast E-value=0, identity=99.15% 
               

               
               891-1008, DB217800 TRACH3 Homo sapiens cDNA clone TRACH3007321 5', mRNA 
(dbj|DB217800.1|), blast E-value=0, identity=99.15% 
               

               
               891-1008, DKFZp686C09241_r1 686 (synonym (emb|BX642188.1|), blast E-value=0, 
identity=99.15% 
               

               
               891-1008, 17000599933804 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN288970.1|), blast E-value=0, identity=99.15% 
               

               
               891-1008, E0256F03-5 NIA Mouse Embryonic Stem (ES) cell (Lif-, 48 h, high 
(gb|CN688324.1|), blast E-value=3.00018e-42, identity=94.07% 
               

               
               891-1008, ILLUMIGEN_MCQ_42539 Katze_MMPB2 Macaca mulatta cDNA clone 
(gb|CO648989.1|), blast E-value=0, identity=99.15%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               891-1008, DB154196 THYMU3 Homo sapiens cDNA clone THYMU3032080 5', mRNA 
(dbj|DB154196.1|), blast E-value=0, identity=99.15% 
               

               
               891-1008, DB217800 TRACH3 Homo sapiens cDNA clone TRACH3007321 5', mRNA 
(dbj|DB217800.1|), blast E-value=0, identity=99.15% 
               

               
               891-1008, DKFZp686C09241_r1 686 (synonym (emb|BX642188.1|), blast E-value=0, 
identity=99.15% 
               

               
               891-1008, 17000599933804 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN288970.1|), blast E-value=0, identity=99.15% 
               

               
               891-1008, E0256F03-5 NIA Mouse Embryonic Stem (ES) cell (Lif-, 48 h, high 
(gb|CN688324.1|), blast E-value=3.00018e-42, identity=94.07% 
               

               
               891-1008, ILLUMIGEN_MCQ_42539 Katze_MMPB2 Macaca mulatta cDNA clone 
(gb|CO648989.1|), blast E-value=0, identity=99.15%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-129, gnl|bosTau2|chr16 (52654411-52654541)
               

               
               1-129, gnl|Hg17|chr1 (209566834-209566704)
               

               
               1-129, gnl|Mm7|chr1 (190494737-190494870)
               


               
               150-1164, gnl|bosTau2|chr16 (52654590-52655619)
               

               
               150-1164, gnl|Hg17|chr1 (209566670-209562404)
               

               
               150-1164, gnl|Mm7|chr1 (190494918-190495868)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-129, gnl|bosTau2|chr16 (52654411-52654541)
               

               
               1-129, gnl|Hg17|chr1 (209566834-209566704)
               

               
               1-129, gnl|Mm7|chr1 (190494737-190494870)
               


               
               150-1164, gnl|bosTau2|chr16 (52654590-52655619)
               

               
               150-1164, gnl|Hg17|chr1 (209566670-209562404)
               

               
               150-1164, gnl|Mm7|chr1 (190494918-190495868)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

	891-1008, DB154196 THYMU3 Homo sapiens cDNA clone THYMU3032080 5', mRNA (dbj\|DB154196.1\|), blast E-value=0, identity=99.15%
	891-1008, DB217800 TRACH3 Homo sapiens cDNA clone TRACH3007321 5', mRNA (dbj\|DB217800.1\|), blast E-value=0, identity=99.15%
	891-1008, DKFZp686C09241_r1 686 (synonym (emb\|BX642188.1\|), blast E-value=0, identity=99.15%
	891-1008, 17000599933804 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN288970.1\|), blast E-value=0, identity=99.15%
	891-1008, E0256F03-5 NIA Mouse Embryonic Stem (ES) cell (Lif-, 48 h, high (gb\|CN688324.1\|), blast E-value=3.00018e-42, identity=94.07%
	891-1008, ILLUMIGEN_MCQ_42539 Katze_MMPB2 Macaca mulatta cDNA clone (gb\|CO648989.1\|), blast E-value=0, identity=99.15%

	1-129, gnl\|bosTau2\|chr16 (52654411-52654541)
	1-129, gnl\|Hg17\|chr1 (209566834-209566704)
	1-129, gnl\|Mm7\|chr1 (190494737-190494870)

	150-1164, gnl\|bosTau2\|chr16 (52654590-52655619)
	150-1164, gnl\|Hg17\|chr1 (209566670-209562404)
	150-1164, gnl\|Mm7\|chr1 (190494918-190495868)