Non-Coding RNA Search

Ss1.1-ruio04_m2.5

Sequence:


               
               GGGAGCTGCAGGGTTCTCTTTAGGGGGGTGGGAGGAGAGGGGACATATTTTTGGTTATTT
GGGGGTTTTCAAGCATTGGAACCAAAGGCCAAACAATAAACAGCCTTTACTTTTTAAAGT
AAAATTCATTTTATTTGCAGAATACACTTGTATGGTAGACTATTAAAGATAATTTTATGA
CTGTTTTTACACGTTATAGTGGTTACATCTGCTGTTTGTCTTTAAAATAGAAAAATCAAA
GAAATAAACCCAATCTTGAAGATATGGCCACAATAAAGGCCATGAATTGGTCTTTCATAA
AAATGCAACGGGTATGCTGCTAGAATTATTTAATTTTGTTTGCACTTTTTTTTTTTGATT
GGCATTTTTAAACCAGTATTTAAACTGAAGATGTGTTTTATTAGTTTAACAAAGTTGAAG
GTGACTGCTCTGTACATCATGACCTTAACAATGTTGATGCTGTAAGTGAAAGTTCACTGT
TGTCTCTATACTAAGTTTATTGGTGTTTTTAACTTAAAATTAGGACTACAGATTATTTCC
CCACCAGCCTTAGTCCAGGGGTGTGGCTCTGTCCGGATGCAGTATGCAGTCATGTGGAAC
CTTGCTTTCTAGTGCTGGAAAAGAAGATGTCTCTAATTACTGGCTTCAATAAACATGAAT
CCAGACTGCTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCTGCAGGGTTCTCTTTAGGGGGGTGGGAGGAGAGGGGACATATTTTTGGTTATTT
GGGGGTTTTCAAGCATTGGAACCAAAGGCCAAACAATAAACAGCCTTTACTTTTTAAAGT
AAAATTCATTTTATTTGCAGAATACACTTGTATGGTAGACTATTAAAGATAATTTTATGA
CTGTTTTTACACGTTATAGTGGTTACATCTGCTGTTTGTCTTTAAAATAGAAAAATCAAA
GAAATAAACCCAATCTTGAAGATATGGCCACAATAAAGGCCATGAATTGGTCTTTCATAA
AAATGCAACGGGTATGCTGCTAGAATTATTTAATTTTGTTTGCACTTTTTTTTTTTGATT
GGCATTTTTAAACCAGTATTTAAACTGAAGATGTGTTTTATTAGTTTAACAAAGTTGAAG
GTGACTGCTCTGTACATCATGACCTTAACAATGTTGATGCTGTAAGTGAAAGTTCACTGT
TGTCTCTATACTAAGTTTATTGGTGTTTTTAACTTAAAATTAGGACTACAGATTATTTCC
CCACCAGCCTTAGTCCAGGGGTGTGGCTCTGTCCGGATGCAGTATGCAGTCATGTGGAAC
CTTGCTTTCTAGTGCTGGAAAAGAAGATGTCTCTAATTACTGGCTTCAATAAACATGAAT
CCAGACTGCTTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               198-314, - strand, RNAz p=0.518225

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-314, - strand, RNAz p=0.518225

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-675, gnl|bosTau2|chr18 (26694696-26694024)
               

               
               1-675, gnl|Hg17|chr16 (65312972-65312297)
               

               
               1-675, gnl|Mm7|chr8 (103017795-103016980)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-675, gnl|bosTau2|chr18 (26694696-26694024)
               

               
               1-675, gnl|Hg17|chr16 (65312972-65312297)
               

               
               1-675, gnl|Mm7|chr8 (103017795-103016980)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               ece (0.687916)
               

               
               aor (0.585823)
               

               
               spc (0.566829)
               

               
               sug (0.509165)
               

               
               tra (0.492368)
               

               
               cbl (0.45919)
               

               
               csk (0.422238)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               aor (0.585823)
               

               
               spc (0.566829)
               

               
               sug (0.509165)
               

               
               tra (0.492368)
               

               
               cbl (0.45919)
               

               
               csk (0.422238)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

	1-675, gnl\|bosTau2\|chr18 (26694696-26694024)
	1-675, gnl\|Hg17\|chr16 (65312972-65312297)
	1-675, gnl\|Mm7\|chr8 (103017795-103016980)

	ece (0.687916)
	aor (0.585823)
	spc (0.566829)
	sug (0.509165)
	tra (0.492368)
	cbl (0.45919)
	csk (0.422238)
	amn (0.417711)
	ova (0.387397)
	vin (0.332557)
	fce (0.271592)
	ssp (0.271039)
	kid (0.259471)
	cbe (0.239234)
	pgl (0.236967)
	pan (0.23596)
	mgp (0.230681)
	ecc (0.23007)
	fcc (0.197785)
	sag (0.182715)
	sto (0.179824)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	hyp (0.142837)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	med (0.116252)