Ss1.1-ruio05_b7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGAACGGCTTTGGCACAGTGGTCAATGCTCTTGGCAAACGAGTCAAACCTTATTTGCCT CAGATCTGTGGTACAGTTTTGTGGCGTTTAAATAACAAATCAGCAAAGGTTAGGCAACAG GCAGCTGACTTGATATCTCGAACGGCTGTTGTCATGAAGACTTGTCAAGAGGAAAAATTG ATGGGTCACTTGGGTGTTGTTTTGTATGAGTATTTGGGTGAAGAGTACCCTGAAGTATTG GGCAGCATTCTTGGAGCACTGAAGGCCATTGTAAATGTAATAGGTATGCATAAGATGACA CCGCCAATTAAAGATCTGCTGCCTAGACTCACTCCCATCTTAAAGAATAGGCATGAAAAA GTGCAAGAGAATTGTATTGATCTTGTTGGACGTATTGCTGATAGGGGAGCTGAATATGTG TCTGCAAGAGAATGGATGAGGATTTGCTTTGAGCTTTTAGAGCTCTTAAAAGCTCACAAA AAAGCTATTCGTAGAGCCACAGTCAACACATTTGGCTATATTGCAAAGGCCATTGGCCCT CATGATGTATTGGCTACACTTTTGAACAACCTCAAAGTTCAGGAAAGGCAGAACAGAGTT TGTACCACTGTAGCAATTGCTATTGTTGCTGAAACATGTTCACCCTTCACAGTACTACCT GCCTTAATGAATGAATACAGAGTTCCTGAACTGAATGTTCAAAATGGAGTGTTAAAATCA CTTTCCTTCTTGTTTGAATATATTGGTGAAATGGGAAAGGACTACATTTATGCTGTAACA CCATTACTTGAAGATGCTTTAATGGATAGGGACCTTGTACATAGACAGACGGCTAGTGCG GTGGTGCAACACATGTCACTTGGGGTTTATGGATTTGGTTGTGAAGATTCGCTGAATCAC TTGTTGAACTATGTATGGCCCAATGTGTTTGAGACCTCTCCCCATGTAATTCAGGCAGTT ATGGGGGCCCTGGAGGGTCTGAGAGTTGCTATTGGACCATGTAGAATGCTGCAGTATTGT TTACAGGGTTTGTTTCACCCAGCCCGGAAAGTCAGAGATGTGTACTGGAAAATTTACAAC TCCATCTACATTGGTTCACAGGATGCTCTCATAGCACATTACCCAAGAATCTACAATGAT GATAAGAATACTTATATTCGTTATGAACTTGACTATATCTTATAACTTTATTGTTAAATT TTGTGTTTAATGCACAGCTGTTTCACAACTTAAACTTGCTTCGATTTGGTGATGTAAACT TTTAAACATTGCAGATCAGCGTAGAACTGGTCATAGAAGAAGAGCTAGAAATCCAGTAGC ATGATTTTTTAAATAACCTGTCTTTGTTTTTGATGTAAACAGTAAACGCCAGTAGTGACC AAGAACACAGTGATACACACATTATACTGGAGGGATTTCATTTGTAATTCATCTTTATGA AGATTTAGAATTCATTCCTTATGTTTAAAGGGAATGTTTAATTGAGAAATAAACATTTGT GTACAAAATGCTAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGAACGGCTTTGGCACAGTGGTCAATGCTCTTGGCAAACGAGTCAAACCTTATTTGCCT CAGATCTGTGGTACAGTTTTGTGGCGTTTAAATAACAAATCAGCAAAGGTTAGGCAACAG GCAGCTGACTTGATATCTCGAACGGCTGTTGTCATGAAGACTTGTCAAGAGGAAAAATTG ATGGGTCACTTGGGTGTTGTTTTGTATGAGTATTTGGGTGAAGAGTACCCTGAAGTATTG GGCAGCATTCTTGGAGCACTGAAGGCCATTGTAAATGTAATAGGTATGCATAAGATGACA CCGCCAATTAAAGATCTGCTGCCTAGACTCACTCCCATCTTAAAGAATAGGCATGAAAAA GTGCAAGAGAATTGTATTGATCTTGTTGGACGTATTGCTGATAGGGGAGCTGAATATGTG TCTGCAAGAGAATGGATGAGGATTTGCTTTGAGCTTTTAGAGCTCTTAAAAGCTCACAAA AAAGCTATTCGTAGAGCCACAGTCAACACATTTGGCTATATTGCAAAGGCCATTGGCCCT CATGATGTATTGGCTACACTTTTGAACAACCTCAAAGTTCAGGAAAGGCAGAACAGAGTT TGTACCACTGTAGCAATTGCTATTGTTGCTGAAACATGTTCACCCTTCACAGTACTACCT GCCTTAATGAATGAATACAGAGTTCCTGAACTGAATGTTCAAAATGGAGTGTTAAAATCA CTTTCCTTCTTGTTTGAATATATTGGTGAAATGGGAAAGGACTACATTTATGCTGTAACA CCATTACTTGAAGATGCTTTAATGGATAGGGACCTTGTACATAGACAGACGGCTAGTGCG GTGGTGCAACACATGTCACTTGGGGTTTATGGATTTGGTTGTGAAGATTCGCTGAATCAC TTGTTGAACTATGTATGGCCCAATGTGTTTGAGACCTCTCCCCATGTAATTCAGGCAGTT ATGGGGGCCCTGGAGGGTCTGAGAGTTGCTATTGGACCATGTAGAATGCTGCAGTATTGT TTACAGGGTTTGTTTCACCCAGCCCGGAAAGTCAGAGATGTGTACTGGAAAATTTACAAC TCCATCTACATTGGTTCACAGGATGCTCTCATAGCACATTACCCAAGAATCTACAATGAT GATAAGAATACTTATATTCGTTATGAACTTGACTATATCTTATAACTTTATTGTTAAATT TTGTGTTTAATGCACAGCTGTTTCACAACTTAAACTTGCTTCGATTTGGTGATGTAAACT TTTAAACATTGCAGATCAGCGTAGAACTGGTCATAGAAGAAGAGCTAGAAATCCAGTAGC ATGATTTTTTAAATAACCTGTCTTTGTTTTTGATGTAAACAGTAAACGCCAGTAGTGACC AAGAACACAGTGATACACACATTATACTGGAGGGATTTCATTTGTAATTCATCTTTATGA AGATTTAGAATTCATTCCTTATGTTTAAAGGGAATGTTTAATTGAGAAATAAACATTTGT GTACAAAATGCTAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 576-1514, + strand, RNAz p=0.973972 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 576-1514, + strand, RNAz p=0.973972 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-179, gnl|bosTau2|chr2 (50628186-50628008) | |
| 1-179, gnl|canFam2|chr37 (9931212-9931416) | |
| 1-179, gnl|dasNov1|scaffold_101829 (1578-1374) | |
| 1-179, gnl|echTel1|scaffold_293573 (81068-80864) | |
| 1-179, gnl|fr1|chrUn (268471771-268471576) | |
| 1-179, gnl|galGal2|chr7 (11030191-11030400) | |
| 1-179, gnl|hg17|chr2 (198090463-198090667) | |
| 1-179, gnl|Hg17|chr2 (198090652-198090474) | |
| 1-179, gnl|loxAfr1|scaffold_26479 (2352-2148) | |
| 1-179, gnl|mm7|chr1 (55244304-55244508) | |
| 1-179, gnl|Mm7|chr1 (55244493-55244315) | |
| 1-179, gnl|monDom2|scaffold_2 (107067378-107067580) | |
| 1-179, gnl|panTro1|chr13 (88042822-88043026) | |
| 1-179, gnl|rheMac2|chr12 (61011713-61011917) | |
| 1-179, gnl|rn3|chr9 (53808252-53808456) | |
| 1-179, gnl|tetNig1|chrUn_random (165342287-165342092) | |
| 1-179, gnl|xenTro1|scaffold_48 (2870030-2869836) | |
| 279-416, gnl|bosTau2|chr2 (50626359-50626222) | |
| 279-416, gnl|canFam2|chr37 (9929419-9929553) | |
| 279-416, gnl|dasNov1|scaffold_101829 (3262-3128) | |
| 279-416, gnl|echTel1|scaffold_293573 (82905-82774) | |
| 279-416, gnl|fr1|chrUn (268472192-268472058) | |
| 279-416, gnl|galGal2|chr7 (11029797-11029931) | |
| 279-416, gnl|hg17|chr2 (198088680-198088814) | |
| 279-416, gnl|Hg17|chr2 (198088816-198088679) | |
| 279-416, gnl|loxAfr1|scaffold_26479 (4125-3991) | |
| 279-416, gnl|mm7|chr1 (55242666-55242800) | |
| 279-416, gnl|Mm7|chr1 (55242802-55242665) | |
| 279-416, gnl|monDom2|scaffold_2 (107065360-107065496) | |
| 279-416, gnl|oryCun1|scaffold_193724 (17778-17912) | |
| 279-416, gnl|panTro1|chr13 (88041039-88041173) | |
| 279-416, gnl|rheMac2|chr12 (61009930-61010064) | |
| 279-416, gnl|rn3|chr9 (53804267-53804401) | |
| 279-416, gnl|tetNig1|chrUn_random (165345985-165345857) | |
| 279-416, gnl|xenTro1|scaffold_48 (2870449-2870319) | |
| 536-810, gnl|bosTau2|chr2 (50624271-50623997) | |
| 536-810, gnl|canFam2|chr37 (9926665-9926975) | |
| 536-810, gnl|dasNov1|scaffold_101829 (5870-5560) | |
| 536-810, gnl|fr1|chrUn (268472828-268472515) | |
| 536-810, gnl|galGal2|chr7 (11028086-11028398) | |
| 536-810, gnl|hg17|chr2 (198086273-198086583) | |
| 536-810, gnl|Hg17|chr2 (198086559-198086285) | |
| 536-810, gnl|loxAfr1|scaffold_26479 (6093-5780) | |
| 536-810, gnl|mm7|chr1 (55237602-55237915) | |
| 536-810, gnl|Mm7|chr1 (55237887-55237613) | |
| 536-810, gnl|monDom2|scaffold_2 (107061297-107061596) | |
| 536-810, gnl|oryCun1|scaffold_193724 (15329-15644) | |
| 536-810, gnl|panTro1|chr13 (88038644-88038954) | |
| 536-810, gnl|rheMac2|chr12 (61006956-61007266) | |
| 536-810, gnl|rn3|chr9 (53800860-53801169) | |
| 536-810, gnl|tetNig1|chrUn_random (165346601-165346291) | |
| 536-810, gnl|xenTro1|scaffold_48 (2877400-2877092) | |
| 1025-1514, gnl|bosTau2|chr2 (50621806-50621321) | |
| 1025-1514, gnl|Hg17|chr2 (198082693-198082204) | |
| 1025-1514, gnl|Mm7|chr1 (55234805-55234334) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-179, gnl|bosTau2|chr2 (50628186-50628008) | |
| 1-179, gnl|canFam2|chr37 (9931212-9931416) | |
| 1-179, gnl|dasNov1|scaffold_101829 (1578-1374) | |
| 1-179, gnl|echTel1|scaffold_293573 (81068-80864) | |
| 1-179, gnl|fr1|chrUn (268471771-268471576) | |
| 1-179, gnl|galGal2|chr7 (11030191-11030400) | |
| 1-179, gnl|hg17|chr2 (198090463-198090667) | |
| 1-179, gnl|Hg17|chr2 (198090652-198090474) | |
| 1-179, gnl|loxAfr1|scaffold_26479 (2352-2148) | |
| 1-179, gnl|mm7|chr1 (55244304-55244508) | |
| 1-179, gnl|Mm7|chr1 (55244493-55244315) | |
| 1-179, gnl|monDom2|scaffold_2 (107067378-107067580) | |
| 1-179, gnl|panTro1|chr13 (88042822-88043026) | |
| 1-179, gnl|rheMac2|chr12 (61011713-61011917) | |
| 1-179, gnl|rn3|chr9 (53808252-53808456) | |
| 1-179, gnl|tetNig1|chrUn_random (165342287-165342092) | |
| 1-179, gnl|xenTro1|scaffold_48 (2870030-2869836) | |
| 279-416, gnl|bosTau2|chr2 (50626359-50626222) | |
| 279-416, gnl|canFam2|chr37 (9929419-9929553) | |
| 279-416, gnl|dasNov1|scaffold_101829 (3262-3128) | |
| 279-416, gnl|echTel1|scaffold_293573 (82905-82774) | |
| 279-416, gnl|fr1|chrUn (268472192-268472058) | |
| 279-416, gnl|galGal2|chr7 (11029797-11029931) | |
| 279-416, gnl|hg17|chr2 (198088680-198088814) | |
| 279-416, gnl|Hg17|chr2 (198088816-198088679) | |
| 279-416, gnl|loxAfr1|scaffold_26479 (4125-3991) | |
| 279-416, gnl|mm7|chr1 (55242666-55242800) | |
| 279-416, gnl|Mm7|chr1 (55242802-55242665) | |
| 279-416, gnl|monDom2|scaffold_2 (107065360-107065496) | |
| 279-416, gnl|oryCun1|scaffold_193724 (17778-17912) | |
| 279-416, gnl|panTro1|chr13 (88041039-88041173) | |
| 279-416, gnl|rheMac2|chr12 (61009930-61010064) | |
| 279-416, gnl|rn3|chr9 (53804267-53804401) | |
| 279-416, gnl|tetNig1|chrUn_random (165345985-165345857) | |
| 279-416, gnl|xenTro1|scaffold_48 (2870449-2870319) | |
| 536-810, gnl|bosTau2|chr2 (50624271-50623997) | |
| 536-810, gnl|canFam2|chr37 (9926665-9926975) | |
| 536-810, gnl|dasNov1|scaffold_101829 (5870-5560) | |
| 536-810, gnl|fr1|chrUn (268472828-268472515) | |
| 536-810, gnl|galGal2|chr7 (11028086-11028398) | |
| 536-810, gnl|hg17|chr2 (198086273-198086583) | |
| 536-810, gnl|Hg17|chr2 (198086559-198086285) | |
| 536-810, gnl|loxAfr1|scaffold_26479 (6093-5780) | |
| 536-810, gnl|mm7|chr1 (55237602-55237915) | |
| 536-810, gnl|Mm7|chr1 (55237887-55237613) | |
| 536-810, gnl|monDom2|scaffold_2 (107061297-107061596) | |
| 536-810, gnl|oryCun1|scaffold_193724 (15329-15644) | |
| 536-810, gnl|panTro1|chr13 (88038644-88038954) | |
| 536-810, gnl|rheMac2|chr12 (61006956-61007266) | |
| 536-810, gnl|rn3|chr9 (53800860-53801169) | |
| 536-810, gnl|tetNig1|chrUn_random (165346601-165346291) | |
| 536-810, gnl|xenTro1|scaffold_48 (2877400-2877092) | |
| 1025-1514, gnl|bosTau2|chr2 (50621806-50621321) | |
| 1025-1514, gnl|Hg17|chr2 (198082693-198082204) | |
| 1025-1514, gnl|Mm7|chr1 (55234805-55234334) |
| Expressed library(ies): 52 entry(ies) | More info |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
| thg (4.05731) | |
| sag (2.19258) | |
| pro (2.04813) | |
| liv (1.60913) | |
| rec (1.38456) | |
| mgp (1.38408) | |
| aor (1.17165) | |
| spl (1.14548) | |
| vin (0.997672) | |
| cmu (0.931966) | |
| ova (0.903926) | |
| gul (0.887942) | |
| ski (0.880411) | |
| mga (0.64082) | |
| bla (0.621736) | |
| tbr (0.616713) | |
| tra (0.61546) | |
| lin (0.582411) | |
| lyg (0.532411) | |
| spc (0.453463) | |
| isp (0.451128) | |
| fat (0.442282) | |
| csk (0.422238) | |
| kid (0.389206) | |
| ret (0.3862) | |
| fhi (0.339155) | |
| fco (0.314416) | |
| bfe (0.299715) | |
| lnt (0.284616) | |
| nmm (0.265604) | |
| sug (0.254582) | |
| cbe (0.239234) | |
| med (0.232504) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (4.05731) | |
| sag (2.19258) | |
| pro (2.04813) | |
| liv (1.60913) | |
| rec (1.38456) | |
| mgp (1.38408) | |
| aor (1.17165) | |
| spl (1.14548) | |
| vin (0.997672) | |
| cmu (0.931966) | |
| ova (0.903926) | |
| gul (0.887942) | |
| ski (0.880411) | |
| mga (0.64082) | |
| bla (0.621736) | |
| tbr (0.616713) | |
| tra (0.61546) | |
| lin (0.582411) | |
| lyg (0.532411) | |
| spc (0.453463) | |
| isp (0.451128) | |
| fat (0.442282) | |
| csk (0.422238) | |
| kid (0.389206) | |
| ret (0.3862) | |
| fhi (0.339155) | |
| fco (0.314416) | |
| bfe (0.299715) | |
| lnt (0.284616) | |
| nmm (0.265604) | |
| sug (0.254582) | |
| cbe (0.239234) | |
| med (0.232504) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |