Non-Coding RNA Search

Ss1.1-ruio05_d11.5

Sequence:


               
               ATACCCCTGCCTGGATAACTTCCTGTTCAGATGGAAGTAATAGTAAGATTCTGACATAAT
ACAGAGCAGATTCACTGCCTTCGCACCCTGTTTAAGGTCTGCCTCGTTTATTTGGCTTAG
CAACCTGCAGTGACACTAGTATTATACCAGGGCTCTCTGACTCCAGCATCATGGCCTTTA
GTATCAAGGCTGCATGGAGAAAGGATGACAGCCTCAGGGCTTCCTGCTTTCCTTCATCAC
AAGAGCCCCTTGATAGAGGCCATCGTTTGCCCCCATCTTGCTCTTTACTCTCCACTCCAA
GCAGTACGTGGGTACCCAGGCTGGTTCTTGGGCTAGATAGTGGGACCAAGTTCATTTCCT
CCCTATCAGTTCTAACCCAGTCGACTGTGCTACCAGTGTTAGTGGGAAGAGCTGAATTTT
CTCACTATTCCACTGGATCCTATTCCTATCTAGTCAACACACTGCTTCCAGGTACGGGAA
CTGCAGAGGGTGGAATTACCTGAAGAGGGAAAGGGAAACACAAGAGGGGCCTCTGGAGAT
CCTGGCCTTAGCCAGCTGCCCACAAGCCATAAACCAATAAAATAAGAATACTGAGTCACT
TTTTTTAAAATCCGAGTCTTCTTCATTCCCACTGCACTTGGTGCTGCTTTGGCTGACTGG
GAACACCCATAACCACAAAGACTGACAGGAAGACTGGGGACTGTCCACTTCCAGCTTGGA
ACTTACTGTGTAAATACGCTTCCAGAATTGCTACCATGAATTGAAAATGCCACATTCTGC
TTTATAATCTTGACCCATGTTGGGGAAAACTGGCTTTTCCCCCCTGCTCTTTCCAGGGCA
TAAAACCCAACCCCTTCATTAGTGAATCTCATTGTCTTAATTTTTTAGTTTAAAAGAGAA
AATTTTACTTTTTTTCTTTTTACAGTTTCTTCCTCTCTACCCTGAAACCATGAACTCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCCCTGCCTGGATAACTTCCTGTTCAGATGGAAGTAATAGTAAGATTCTGACATAAT
ACAGAGCAGATTCACTGCCTTCGCACCCTGTTTAAGGTCTGCCTCGTTTATTTGGCTTAG
CAACCTGCAGTGACACTAGTATTATACCAGGGCTCTCTGACTCCAGCATCATGGCCTTTA
GTATCAAGGCTGCATGGAGAAAGGATGACAGCCTCAGGGCTTCCTGCTTTCCTTCATCAC
AAGAGCCCCTTGATAGAGGCCATCGTTTGCCCCCATCTTGCTCTTTACTCTCCACTCCAA
GCAGTACGTGGGTACCCAGGCTGGTTCTTGGGCTAGATAGTGGGACCAAGTTCATTTCCT
CCCTATCAGTTCTAACCCAGTCGACTGTGCTACCAGTGTTAGTGGGAAGAGCTGAATTTT
CTCACTATTCCACTGGATCCTATTCCTATCTAGTCAACACACTGCTTCCAGGTACGGGAA
CTGCAGAGGGTGGAATTACCTGAAGAGGGAAAGGGAAACACAAGAGGGGCCTCTGGAGAT
CCTGGCCTTAGCCAGCTGCCCACAAGCCATAAACCAATAAAATAAGAATACTGAGTCACT
TTTTTTAAAATCCGAGTCTTCTTCATTCCCACTGCACTTGGTGCTGCTTTGGCTGACTGG
GAACACCCATAACCACAAAGACTGACAGGAAGACTGGGGACTGTCCACTTCCAGCTTGGA
ACTTACTGTGTAAATACGCTTCCAGAATTGCTACCATGAATTGAAAATGCCACATTCTGC
TTTATAATCTTGACCCATGTTGGGGAAAACTGGCTTTTCCCCCCTGCTCTTTCCAGGGCA
TAAAACCCAACCCCTTCATTAGTGAATCTCATTGTCTTAATTTTTTAGTTTAAAAGAGAA
AATTTTACTTTTTTTCTTTTTACAGTTTCTTCCTCTCTACCCTGAAACCATGAACTCTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               164-480, - strand, RNAz p=0.990325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-480, - strand, RNAz p=0.990325

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               362-478, + strand, RNAmicro p=0.999959

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               362-478, + strand, RNAmicro p=0.999959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-958, gnl|bosTau2|chr15 (13563273-13562302)
               

               
               2-958, gnl|Hg17|chr11 (116664354-116663384)
               

               
               2-958, gnl|Mm7|chr9 (45819511-45820497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-958, gnl|bosTau2|chr15 (13563273-13562302)
               

               
               2-958, gnl|Hg17|chr11 (116664354-116663384)
               

               
               2-958, gnl|Mm7|chr9 (45819511-45820497)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	2-958, gnl\|bosTau2\|chr15 (13563273-13562302)
	2-958, gnl\|Hg17\|chr11 (116664354-116663384)
	2-958, gnl\|Mm7\|chr9 (45819511-45820497)