Non-Coding RNA Search

Ss1.1-ruio05_f13.5.5

Sequence:


               
               CCCAGAAGTCACAGCTGATTATACATCACAGAGCTCATACTGGAGAAAAGCCTTATGAGT
GTACTGTATGTGGGAAAGCCTTCTGTGAGAAGTCTCACCTCATTATACATAAAAGAATTC
ACACGGGTGAGAAACCCTACAAATGTGCTCAATGTGAGGAAGCCTTCAGCAGGAAGACAG
AACTCATTACACACCACTTAATTCATACTGGGGAGAAACCTTATGAGTGTACCGAATGTG
GGAAGACGTTCTCCCGGAAGTCACAGCTCATTATACATCAGAGAACACATACTGGAGAGA
AACCCTATAAATGCAATGAATGTGGCAAAGCCTTTTGTCAGAAATCACATCTTATTGGAC
ATCAGAGAATTCATACAGGAGAAAAACCTTACGTTTGTACTGAATGTGGGAAAGCCTTCT
CTCAAAAGTCTCACCTTCCAGGTCATCAGCGGATTCATACAGGAGAGAAACCTTACATAT
GTACTGAATGTGGAAAGGCCTTTTCCCAGAAATCAGATCTTGTTTTACATCAGAGAATTC
ATACTGGGGAAAGACCCTATCGTTGTGCTGTATGTGGAAAAGCCTTCATTCAGAAGTCAC
AACTCACTGTACATCAGAGAATTCATAACAGTGGTAAAATCATAATGAACTAAACACAGA
CAAGCCTTCAGTATTATCTCGAGCCTTAATAGATAACAGAAACCTAATTAATTTGATACA
TTTGCAGAAGAAATCATTATAGAGAAAATTTTAACAAGAATTCAAGTCTGTAGTATGATG
TTACCTAACAAAGCAAAGATGATGGAAAATAGCTACATAAATGATATTTTCACCATGGCA
TGTAAAGTTGTGAACTGAATGGTCAGTAGAACAAATTATGTATATAGACTGTTTTTAAGT
TACATGTTCCTTATTATACTGCATAACAATAAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGAAGTCACAGCTGATTATACATCACAGAGCTCATACTGGAGAAAAGCCTTATGAGT
GTACTGTATGTGGGAAAGCCTTCTGTGAGAAGTCTCACCTCATTATACATAAAAGAATTC
ACACGGGTGAGAAACCCTACAAATGTGCTCAATGTGAGGAAGCCTTCAGCAGGAAGACAG
AACTCATTACACACCACTTAATTCATACTGGGGAGAAACCTTATGAGTGTACCGAATGTG
GGAAGACGTTCTCCCGGAAGTCACAGCTCATTATACATCAGAGAACACATACTGGAGAGA
AACCCTATAAATGCAATGAATGTGGCAAAGCCTTTTGTCAGAAATCACATCTTATTGGAC
ATCAGAGAATTCATACAGGAGAAAAACCTTACGTTTGTACTGAATGTGGGAAAGCCTTCT
CTCAAAAGTCTCACCTTCCAGGTCATCAGCGGATTCATACAGGAGAGAAACCTTACATAT
GTACTGAATGTGGAAAGGCCTTTTCCCAGAAATCAGATCTTGTTTTACATCAGAGAATTC
ATACTGGGGAAAGACCCTATCGTTGTGCTGTATGTGGAAAAGCCTTCATTCAGAAGTCAC
AACTCACTGTACATCAGAGAATTCATAACAGTGGTAAAATCATAATGAACTAAACACAGA
CAAGCCTTCAGTATTATCTCGAGCCTTAATAGATAACAGAAACCTAATTAATTTGATACA
TTTGCAGAAGAAATCATTATAGAGAAAATTTTAACAAGAATTCAAGTCTGTAGTATGATG
TTACCTAACAAAGCAAAGATGATGGAAAATAGCTACATAAATGATATTTTCACCATGGCA
TGTAAAGTTGTGAACTGAATGGTCAGTAGAACAAATTATGTATATAGACTGTTTTTAAGT
TACATGTTCCTTATTATACTGCATAACAATAAACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5H8Z5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5H8Z5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               55-174, + strand, RNAz p=0.539084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-174, + strand, RNAz p=0.539084

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-708, gnl|bosTau2|chr17 (22552978-22552269)
               

               
               1-708, gnl|Mm7|chr5 (109294484-109295103)
               


               
               2-703, gnl|bosTau2|chr11 (74554896-74554193)
               

               
               2-703, gnl|Hg17|chr9 (127286310-127287013)
               

               
               2-703, gnl|Mm7|chr11 (62796098-62795395)
               


               
               3-644, gnl|bosTau2|chr10 (8996888-8996248)
               

               
               3-644, gnl|Hg17|chr19 (42818687-42817969)
               

               
               3-644, gnl|Mm7|chr2 (127310318-127309679)
               


               
               15-642, gnl|bosTau2|chr10 (8996624-8995997)
               

               
               15-642, gnl|Hg17|chr19 (42818429-42817755)
               

               
               15-642, gnl|Mm7|chr2 (127310055-127309512)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr17 (22552978-22552269)
               

               
               1-708, gnl|Mm7|chr5 (109294484-109295103)
               


               
               2-703, gnl|bosTau2|chr11 (74554896-74554193)
               

               
               2-703, gnl|Hg17|chr9 (127286310-127287013)
               

               
               2-703, gnl|Mm7|chr11 (62796098-62795395)
               


               
               3-644, gnl|bosTau2|chr10 (8996888-8996248)
               

               
               3-644, gnl|Hg17|chr19 (42818687-42817969)
               

               
               3-644, gnl|Mm7|chr2 (127310318-127309679)
               


               
               15-642, gnl|bosTau2|chr10 (8996624-8995997)
               

               
               15-642, gnl|Hg17|chr19 (42818429-42817755)
               

               
               15-642, gnl|Mm7|chr2 (127310055-127309512)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fco (0.471624)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	1-708, gnl\|bosTau2\|chr17 (22552978-22552269)
	1-708, gnl\|Mm7\|chr5 (109294484-109295103)

	2-703, gnl\|bosTau2\|chr11 (74554896-74554193)
	2-703, gnl\|Hg17\|chr9 (127286310-127287013)
	2-703, gnl\|Mm7\|chr11 (62796098-62795395)

	3-644, gnl\|bosTau2\|chr10 (8996888-8996248)
	3-644, gnl\|Hg17\|chr19 (42818687-42817969)
	3-644, gnl\|Mm7\|chr2 (127310318-127309679)

	15-642, gnl\|bosTau2\|chr10 (8996624-8995997)
	15-642, gnl\|Hg17\|chr19 (42818429-42817755)
	15-642, gnl\|Mm7\|chr2 (127310055-127309512)

	fco (0.471624)
	lin (0.436808)
	ret (0.3862)
	gul (0.355177)
	aor (0.195274)
	eye (0.170503)
	fat (0.147427)
	liv (0.146284)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	ecc (0.115035)