Non-Coding RNA Search

Ss1.1-ruio05_h18.5

Sequence:


               
               CAACGATCACCGCTACCTCTCCTGGTGCTCTGTGGGGTTTGGACAGGGTAACCTTCAGGA
GAATAATTGTAAAAAATAATGCCAAAAAGAGGAAAATGTATGAAAGCTTTATTGAGTCAC
TGCCATTCCTTAAATCTTTGGAAGTTTCTGAACGCCTGAAAGTGGTGGATGTAATAGGCA
CCAAAGTGTACAACGATGGAGAACAAATCATTGCTCAGGGAGATTTGGCTGATTCTTTTT
TCATTGTAGAATCTGGAGAAGTCAAAATTACCATGAAAAGGAAGGGGAAGTCAGAAGTGG
AGGAGAACGGTGCCGTGGAAATTGCTCGGTGTTCCCGGGGACAGTACTTCGGAGAACTTG
CCCTGGTAACGAACAAACCCCGAGCGGCTTCCGCACACGCCATCGGAACCGTCAAATGTT
TAGCCATGGATGTGCAAGCATTTGAAAGGCTTTTGGGACCTTGCATGGAAATTATGAAAA
GGAACATCGCTACCTATGAAGAACAATTAGTTGCCCTATTTGGAACAAACATGGATATTG
TTGAACCCACTGCATGAAGCAAAAGTATGGAGCAAAAAGACCTATAGTGACACAGTTACA
CAGTAGTGGTTAGTCCACTGAGAATGTGTTTGTGTAGATGCCAAGCATTTTCTGTGATTT
CAGGTTTTTTCCTTTTTTTACATTGACAATGTATCGGTAAACAGAGTAGTGATTTAATAG
TCAGTAGACTTTAACATCACTTTCTAAAAGAGTAGATCAAAAAAATATCAACATACTGAT
AAAATGACTTTCTACTACTCCACACAATTATGATTTGACTGAAAGGTTTATTCAATAATT
GTAATATATTGAAAGTATCTGTGTTTAAGAATGCAATTAAAGGATGTTATCATAGGCAAT
GTGTGTTCATTTTGACTTACTTGGATTGATAGGTTATGACTACGCCCATGTAAGAGAGAA
CTTGGCAGTGAATCATGCTATACAGCATGGCATTACATTCTTTTTACAACTCACTGTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGATCACCGCTACCTCTCCTGGTGCTCTGTGGGGTTTGGACAGGGTAACCTTCAGGA
GAATAATTGTAAAAAATAATGCCAAAAAGAGGAAAATGTATGAAAGCTTTATTGAGTCAC
TGCCATTCCTTAAATCTTTGGAAGTTTCTGAACGCCTGAAAGTGGTGGATGTAATAGGCA
CCAAAGTGTACAACGATGGAGAACAAATCATTGCTCAGGGAGATTTGGCTGATTCTTTTT
TCATTGTAGAATCTGGAGAAGTCAAAATTACCATGAAAAGGAAGGGGAAGTCAGAAGTGG
AGGAGAACGGTGCCGTGGAAATTGCTCGGTGTTCCCGGGGACAGTACTTCGGAGAACTTG
CCCTGGTAACGAACAAACCCCGAGCGGCTTCCGCACACGCCATCGGAACCGTCAAATGTT
TAGCCATGGATGTGCAAGCATTTGAAAGGCTTTTGGGACCTTGCATGGAAATTATGAAAA
GGAACATCGCTACCTATGAAGAACAATTAGTTGCCCTATTTGGAACAAACATGGATATTG
TTGAACCCACTGCATGAAGCAAAAGTATGGAGCAAAAAGACCTATAGTGACACAGTTACA
CAGTAGTGGTTAGTCCACTGAGAATGTGTTTGTGTAGATGCCAAGCATTTTCTGTGATTT
CAGGTTTTTTCCTTTTTTTACATTGACAATGTATCGGTAAACAGAGTAGTGATTTAATAG
TCAGTAGACTTTAACATCACTTTCTAAAAGAGTAGATCAAAAAAATATCAACATACTGAT
AAAATGACTTTCTACTACTCCACACAATTATGATTTGACTGAAAGGTTTATTCAATAATT
GTAATATATTGAAAGTATCTGTGTTTAAGAATGCAATTAAAGGATGTTATCATAGGCAAT
GTGTGTTCATTTTGACTTACTTGGATTGATAGGTTATGACTACGCCCATGTAAGAGAGAA
CTTGGCAGTGAATCATGCTATACAGCATGGCATTACATTCTTTTTACAACTCACTGTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O60380_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O60380_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               579-803, + strand, RNAz p=0.636446

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               579-803, + strand, RNAz p=0.636446

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002736, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002736, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               38-145, gnl|bosTau2|chr4 (20465862-20465969)
               

               
               38-145, gnl|canFam2|chr18 (16369607-16369499)
               

               
               38-145, gnl|danRer3|chr23 (55336991-55337099)
               

               
               38-145, gnl|dasNov1|scaffold_2558 (97908-97800)
               

               
               38-145, gnl|fr1|chrUn (61875618-61875726)
               

               
               38-145, gnl|galGal2|chr1 (9157382-9157279)
               

               
               38-145, gnl|hg17|chr7 (106385313-106385421)
               

               
               38-145, gnl|Hg17|chr7 (106385314-106385421)
               

               
               38-145, gnl|loxAfr1|scaffold_67042 (35674-35782)
               

               
               38-145, gnl|mm7|chr12 (29806880-29806772)
               

               
               38-145, gnl|Mm7|chr12 (29806877-29806770)
               

               
               38-145, gnl|monDom2|scaffold_22 (45587346-45587238)
               

               
               38-145, gnl|oryCun1|scaffold_152207 (13200-13303)
               

               
               38-145, gnl|panTro1|chr6 (108294545-108294653)
               

               
               38-145, gnl|rheMac2|chr3 (144572872-144572980)
               

               
               38-145, gnl|rn3|chr6 (50246401-50246293)
               

               
               38-145, gnl|tetNig1|chr13 (10066766-10066874)
               

               
               38-145, gnl|xenTro1|scaffold_452 (234698-234806)
               


               
               420-1019, gnl|bosTau2|chr4 (20472366-20472957)
               

               
               420-1019, gnl|Hg17|chr7 (106393841-106394426)
               

               
               420-1019, gnl|Mm7|chr12 (29800084-29799491)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-145, gnl|bosTau2|chr4 (20465862-20465969)
               

               
               38-145, gnl|canFam2|chr18 (16369607-16369499)
               

               
               38-145, gnl|danRer3|chr23 (55336991-55337099)
               

               
               38-145, gnl|dasNov1|scaffold_2558 (97908-97800)
               

               
               38-145, gnl|fr1|chrUn (61875618-61875726)
               

               
               38-145, gnl|galGal2|chr1 (9157382-9157279)
               

               
               38-145, gnl|hg17|chr7 (106385313-106385421)
               

               
               38-145, gnl|Hg17|chr7 (106385314-106385421)
               

               
               38-145, gnl|loxAfr1|scaffold_67042 (35674-35782)
               

               
               38-145, gnl|mm7|chr12 (29806880-29806772)
               

               
               38-145, gnl|Mm7|chr12 (29806877-29806770)
               

               
               38-145, gnl|monDom2|scaffold_22 (45587346-45587238)
               

               
               38-145, gnl|oryCun1|scaffold_152207 (13200-13303)
               

               
               38-145, gnl|panTro1|chr6 (108294545-108294653)
               

               
               38-145, gnl|rheMac2|chr3 (144572872-144572980)
               

               
               38-145, gnl|rn3|chr6 (50246401-50246293)
               

               
               38-145, gnl|tetNig1|chr13 (10066766-10066874)
               

               
               38-145, gnl|xenTro1|scaffold_452 (234698-234806)
               


               
               420-1019, gnl|bosTau2|chr4 (20472366-20472957)
               

               
               420-1019, gnl|Hg17|chr7 (106393841-106394426)
               

               
               420-1019, gnl|Mm7|chr12 (29800084-29799491)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fat (0.58971)
               

               
               ova (0.258264)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.58971)
               

               
               ova (0.258264)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	38-145, gnl\|bosTau2\|chr4 (20465862-20465969)
	38-145, gnl\|canFam2\|chr18 (16369607-16369499)
	38-145, gnl\|danRer3\|chr23 (55336991-55337099)
	38-145, gnl\|dasNov1\|scaffold_2558 (97908-97800)
	38-145, gnl\|fr1\|chrUn (61875618-61875726)
	38-145, gnl\|galGal2\|chr1 (9157382-9157279)
	38-145, gnl\|hg17\|chr7 (106385313-106385421)
	38-145, gnl\|Hg17\|chr7 (106385314-106385421)
	38-145, gnl\|loxAfr1\|scaffold_67042 (35674-35782)
	38-145, gnl\|mm7\|chr12 (29806880-29806772)
	38-145, gnl\|Mm7\|chr12 (29806877-29806770)
	38-145, gnl\|monDom2\|scaffold_22 (45587346-45587238)
	38-145, gnl\|oryCun1\|scaffold_152207 (13200-13303)
	38-145, gnl\|panTro1\|chr6 (108294545-108294653)
	38-145, gnl\|rheMac2\|chr3 (144572872-144572980)
	38-145, gnl\|rn3\|chr6 (50246401-50246293)
	38-145, gnl\|tetNig1\|chr13 (10066766-10066874)
	38-145, gnl\|xenTro1\|scaffold_452 (234698-234806)

	420-1019, gnl\|bosTau2\|chr4 (20472366-20472957)
	420-1019, gnl\|Hg17\|chr7 (106393841-106394426)
	420-1019, gnl\|Mm7\|chr12 (29800084-29799491)

	fat (0.58971)
	ova (0.258264)
	cmu (0.186393)
	sto (0.179824)
	ski (0.146735)
	kid (0.129735)
	thg (0.126791)
	ecc (0.115035)
	cbl (0.114797)