Non-Coding RNA Search

Ss1.1-ruio05_j20.5

Sequence:


               
               CTTCAGGCAAGTCTCCTTTATAATGGTTTTTCAAATGCCATTCATCCTGGTTGTCATGTG
GTGTGTGTTTGTAAGTATGAATGTACTTTTTCCAGAAGCTTGGCAAATGAATAGAAGTGA
AAAGTAATGATGTTATTTACCAATACAAGTGAAATGATTAAGTTAAAAGTGTCTACAAAG
TCTTTGTTAGGCCTGACTGGGTACGATTTTTTTTTTTTTTTAATTTGCAGTGGTTTGTGT
ACATGTTGCCAATAATAAGATTTTGCAACTGGATGACACATGATTTTACTTGAACAGTAA
AGGACAAAATCACAATTGCAGAACACATGTTTATAATCTGCCTTTTCAGAGATCATCCCC
AAACCCTGTAATGATCTAAGAGAGTGAAATAACAATTGCTAAAGTTTTGTTGGTTAATGT
AAAGCTATAACTTTTCTAAACTGTACTTTACTTGCTTCATCGAATTGTAAAGATATTCTA
ATCAACTTTATATCTTGCATGATGTAGTAAACCTTTTAAATGTGTGTGTTAAAATATGTT
ACTTTTGGATTAAGATGTTGACCAGATTTCACATTTGAAAATATACACTCATCTCTCATC
AGGAAGTTAACTATTGGTAACATGACAGGGGGTGGATTAATCAGCAAAAGTTGATTGTAG
AATCTTTGTAAAGGTTGTCGTGTACTAACATTATGAATTGTAGTTTATGAACTGAAGTAA
TCAGAAGTATCTCTGGTCATATTGCTGTTGCTAACAAAATGAGATAACCTTTGAAAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGGCAAGTCTCCTTTATAATGGTTTTTCAAATGCCATTCATCCTGGTTGTCATGTG
GTGTGTGTTTGTAAGTATGAATGTACTTTTTCCAGAAGCTTGGCAAATGAATAGAAGTGA
AAAGTAATGATGTTATTTACCAATACAAGTGAAATGATTAAGTTAAAAGTGTCTACAAAG
TCTTTGTTAGGCCTGACTGGGTACGATTTTTTTTTTTTTTTAATTTGCAGTGGTTTGTGT
ACATGTTGCCAATAATAAGATTTTGCAACTGGATGACACATGATTTTACTTGAACAGTAA
AGGACAAAATCACAATTGCAGAACACATGTTTATAATCTGCCTTTTCAGAGATCATCCCC
AAACCCTGTAATGATCTAAGAGAGTGAAATAACAATTGCTAAAGTTTTGTTGGTTAATGT
AAAGCTATAACTTTTCTAAACTGTACTTTACTTGCTTCATCGAATTGTAAAGATATTCTA
ATCAACTTTATATCTTGCATGATGTAGTAAACCTTTTAAATGTGTGTGTTAAAATATGTT
ACTTTTGGATTAAGATGTTGACCAGATTTCACATTTGAAAATATACACTCATCTCTCATC
AGGAAGTTAACTATTGGTAACATGACAGGGGGTGGATTAATCAGCAAAAGTTGATTGTAG
AATCTTTGTAAAGGTTGTCGTGTACTAACATTATGAATTGTAGTTTATGAACTGAAGTAA
TCAGAAGTATCTCTGGTCATATTGCTGTTGCTAACAAAATGAGATAACCTTTGAAAAATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr1 (32427140-32427908)
               

               
               1-780, gnl|Hg17|chr3 (113177233-113178000)
               

               
               1-780, gnl|Mm7|chr16 (45524292-45523551)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr1 (32427140-32427908)
               

               
               1-780, gnl|Hg17|chr3 (113177233-113178000)
               

               
               1-780, gnl|Mm7|chr16 (45524292-45523551)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

	1-780, gnl\|bosTau2\|chr1 (32427140-32427908)
	1-780, gnl\|Hg17\|chr3 (113177233-113178000)
	1-780, gnl\|Mm7\|chr16 (45524292-45523551)