Non-Coding RNA Search

Ss1.1-ruio05_n21.5

Sequence:


               
               TGAGTGCAGCGCAGGGGCGTTTAATTCTGTTTTCCGGATTCTGAGGTCTGGAGGCGAAGC
ATATTATATGTAAAAGTGGATCCATGATAAATGAAAATGGCCAATTCTTTAAGAGGAGAA
GTATTGAATCTTTATAAAAATCTGCTGTATCTTGGACGAGACTATCCAAAAGGAGCAGAC
TATTTTAAAAGGCGTCTGAAGAATGTTTTCCTTAAAAACAAAGATGTGAAGGACCCAGAG
AAGATCAAAGAACTTATTGCACGGGGCAAATTTGTAATGAAAGAACTAGAAGCATTATAC
TTCCTTAGGAAATACAGGGCTATGAAACAACGCTATTATTCAGATACCAACACAACTAAC
TGATCACTATTACTGTAATTTGGATGAAAGTCAGTGCCAGCTGCTTATGTATACCAGATA
TTACAAAAGTAATTCTAACTTAAAATGTCAAGAAATATACATTGTGGTAAGAAAAAAAAC
GTGAGCTGCCTTACTGAACTAAAATGGATTTCAACTTCTATTCATACTAAGAGTTTTATC
AGAAACTTTTATGCTCAATTTTTATACTAAAATAGCAATTTAACTATGTATTATTTCCAA
TTACCCATTAAAAATTGATGAGCACCCAATTTTGAATAGACATATAATGTACTGAATTTT
TAATTGATAAATTTTTGCCAATTATCCTTAGCCCATTCCTACATTTTCTTGAAAAGAGAA
TGCTTTTTAATGCACATTTAAGTAATAAGCAAAATCATTTCTTGCAAATTTACTCCCCTG
AACTTTTGAAGGAGTTCCTTATTTTTGACCCCACTTGGTACATAAACAGTACATATTCAA
GGTTCATTGCAAAAGAAATAGCATCTGTTAGTGATTTAAGTGCAGTTAGAAATAATATTG
AGCAAGATTACTCCTGAACTTGAAAGAGCCTACCAGCAATTGGCATTACATATATACTTA
TTTAATTATTTCCATTATTACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTGCAGCGCAGGGGCGTTTAATTCTGTTTTCCGGATTCTGAGGTCTGGAGGCGAAGC
ATATTATATGTAAAAGTGGATCCATGATAAATGAAAATGGCCAATTCTTTAAGAGGAGAA
GTATTGAATCTTTATAAAAATCTGCTGTATCTTGGACGAGACTATCCAAAAGGAGCAGAC
TATTTTAAAAGGCGTCTGAAGAATGTTTTCCTTAAAAACAAAGATGTGAAGGACCCAGAG
AAGATCAAAGAACTTATTGCACGGGGCAAATTTGTAATGAAAGAACTAGAAGCATTATAC
TTCCTTAGGAAATACAGGGCTATGAAACAACGCTATTATTCAGATACCAACACAACTAAC
TGATCACTATTACTGTAATTTGGATGAAAGTCAGTGCCAGCTGCTTATGTATACCAGATA
TTACAAAAGTAATTCTAACTTAAAATGTCAAGAAATATACATTGTGGTAAGAAAAAAAAC
GTGAGCTGCCTTACTGAACTAAAATGGATTTCAACTTCTATTCATACTAAGAGTTTTATC
AGAAACTTTTATGCTCAATTTTTATACTAAAATAGCAATTTAACTATGTATTATTTCCAA
TTACCCATTAAAAATTGATGAGCACCCAATTTTGAATAGACATATAATGTACTGAATTTT
TAATTGATAAATTTTTGCCAATTATCCTTAGCCCATTCCTACATTTTCTTGAAAAGAGAA
TGCTTTTTAATGCACATTTAAGTAATAAGCAAAATCATTTCTTGCAAATTTACTCCCCTG
AACTTTTGAAGGAGTTCCTTATTTTTGACCCCACTTGGTACATAAACAGTACATATTCAA
GGTTCATTGCAAAAGAAATAGCATCTGTTAGTGATTTAAGTGCAGTTAGAAATAATATTG
AGCAAGATTACTCCTGAACTTGAAAGAGCCTACCAGCAATTGGCATTACATATATACTTA
TTTAATTATTTCCATTATTACATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19526856|ref|NP_598449.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19526856|ref|NP_598449.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-233, + strand, RNAz p=0.906158

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-233, + strand, RNAz p=0.906158

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-980, gnl|bosTau2|chr5 (51709280-51708436)
               

               
               117-980, gnl|Hg17|chr12 (25248265-25249119)
               

               
               117-980, gnl|Mm7|chr6 (145306189-145306963)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-980, gnl|bosTau2|chr5 (51709280-51708436)
               

               
               117-980, gnl|Hg17|chr12 (25248265-25249119)
               

               
               117-980, gnl|Mm7|chr6 (145306189-145306963)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               fco (0.78604)
               

               
               vin (0.665115)
               

               
               tbr (0.462535)
               

               
               kid (0.389206)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               cbl (0.229595)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               vin (0.665115)
               

               
               tbr (0.462535)
               

               
               kid (0.389206)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               cbl (0.229595)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	117-980, gnl\|bosTau2\|chr5 (51709280-51708436)
	117-980, gnl\|Hg17\|chr12 (25248265-25249119)
	117-980, gnl\|Mm7\|chr6 (145306189-145306963)

	fco (0.78604)
	vin (0.665115)
	tbr (0.462535)
	kid (0.389206)
	fce (0.271592)
	cbe (0.239234)
	pan (0.23596)
	cbl (0.229595)
	fbs (0.175346)
	bfe (0.149858)
	lin (0.145603)
	spl (0.143184)
	ssp (0.13552)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	cly (0.120642)
	jca (0.11396)
	ldo (0.0970026)