Ss1.1-ruio06_c14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGCGGCGGCGGGTGTGAGGCGCGGGCTGTTGTGCTCTCGGCTCTCCCTTTTCCCCT CCTTGGCGGGTGGAGGAGGTCGAAGCGGTGCTGGACGCGCTCCCCTTCCTCTCCGGCCAC CTCCCCGGCGCTCTCGCGCTGCGCGGTCTCTCAGACGCAAGACTGTCCCGGCCCGGATAT GGCTCGTGGACAGCAGAAGATTCAGTCTCAGCAGAAAAATGCCAAAAAGCAAGCTGGACA AAAGAAGAAACAAGGACATGACCAAAAGGCTGCTGCCAAAGCTGCCTTAATATATACCTG CACTGTTTGTAGGACACAAATGCCAGACCCTAAGACCTTCAAGCAGCACTTTGAGAGCAA GCATCCTAAGACTCCACTTCCTCCAGAATTAGCTGATGTTCAGGCATAAAATTGTTTACA GGTGAATTCATGACACCTTTGACTCTTCTACTGTCTCAGACCTTAGGTAACAAACCTGCA GCTGCTTTTCTAACAAACTGTTGATCAGCAAAAATAAAGGGGCTACAGAAACACTCATTT TTATGCTGTTCCCTTTTGGGCTTCATGCAAAGACAATTCTGTGTAAATGTACAGTTGACT CTGATTTGGAAATCTGAAAATCAGTCCATCCTTGTTATAAAAATTTTTTTACAATTGTAA TTATATTGATGTTCATATTGTGTAAAATAACTCATTTAATAAAGTAGTACTTTGATTTTA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGCGGCGGCGGGTGTGAGGCGCGGGCTGTTGTGCTCTCGGCTCTCCCTTTTCCCCT CCTTGGCGGGTGGAGGAGGTCGAAGCGGTGCTGGACGCGCTCCCCTTCCTCTCCGGCCAC CTCCCCGGCGCTCTCGCGCTGCGCGGTCTCTCAGACGCAAGACTGTCCCGGCCCGGATAT GGCTCGTGGACAGCAGAAGATTCAGTCTCAGCAGAAAAATGCCAAAAAGCAAGCTGGACA AAAGAAGAAACAAGGACATGACCAAAAGGCTGCTGCCAAAGCTGCCTTAATATATACCTG CACTGTTTGTAGGACACAAATGCCAGACCCTAAGACCTTCAAGCAGCACTTTGAGAGCAA GCATCCTAAGACTCCACTTCCTCCAGAATTAGCTGATGTTCAGGCATAAAATTGTTTACA GGTGAATTCATGACACCTTTGACTCTTCTACTGTCTCAGACCTTAGGTAACAAACCTGCA GCTGCTTTTCTAACAAACTGTTGATCAGCAAAAATAAAGGGGCTACAGAAACACTCATTT TTATGCTGTTCCCTTTTGGGCTTCATGCAAAGACAATTCTGTGTAAATGTACAGTTGACT CTGATTTGGAAATCTGAAAATCAGTCCATCCTTGTTATAAAAATTTTTTTACAATTGTAA TTATATTGATGTTCATATTGTGTAAAATAACTCATTTAATAAAGTAGTACTTTGATTTTA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 176-313, - strand, RNAz p=0.954275 | |
| 200-313, - strand, RNAz p=0.940346 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 176-313, - strand, RNAz p=0.954275 | |
| 200-313, - strand, RNAz p=0.940346 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 176-313, gnl|bosTau2|chr14 (37762257-37762120) | |
| 176-313, gnl|canFam2|chr32 (41489094-41488955) | |
| 176-313, gnl|danRer3|chr19 (40402121-40402259) | |
| 176-313, gnl|dasNov1|scaffold_96619 (4435-4574) | |
| 176-313, gnl|echTel1|scaffold_278466 (1193-1054) | |
| 176-313, gnl|fr1|chrUn (11915007-11914868) | |
| 176-313, gnl|galGal2|chrUn (93665196-93665333) | |
| 176-313, gnl|hg17|chr1 (220670010-220670149) | |
| 176-313, gnl|Hg17|chr8 (102283148-102283011) | |
| 176-313, gnl|loxAfr1|scaffold_8375 (90421-90285) | |
| 176-313, gnl|Mm7|chr15 (37114510-37114373) | |
| 176-313, gnl|mm7|chr6 (65138884-65138744) | |
| 176-313, gnl|monDom2|scaffold_18 (341291-341430) | |
| 176-313, gnl|oryCun1|scaffold_192341 (1171-1034) | |
| 176-313, gnl|panTro1|chr1 (204481554-204481693) | |
| 176-313, gnl|rheMac2|chr11 (111346167-111346027) | |
| 176-313, gnl|rn3|chr7 (72534872-72535008) | |
| 176-313, gnl|tetNig1|chrUn_random (3266981-3266843) | |
| 176-313, gnl|xenTro1|scaffold_3 (5987854-5987715) | |
| 415-723, gnl|bosTau2|chr14 (37758856-37758547) | |
| 415-723, gnl|canFam2|chr13 (5987319-5987631) | |
| 415-723, gnl|canFam2|chr32 (41489670-41489383) | |
| 415-723, gnl|dasNov1|scaffold_96619 (4023-4324) | |
| 415-723, gnl|dasNov1|scaffold_96619 (4038-4324) | |
| 415-723, gnl|echTel1|scaffold_278466 (1597-1304) | |
| 415-723, gnl|echTel1|scaffold_280211 (3290-2979) | |
| 415-723, gnl|fr1|chrUn (11915795-11915565) | |
| 415-723, gnl|galGal2|chrUn (93663527-93663846) | |
| 415-723, gnl|galGal2|chrUn (93663545-93663846) | |
| 415-723, gnl|hg17|chr1 (220669603-220669899) | |
| 415-723, gnl|hg17|chr8 (102280330-102280642) | |
| 415-723, gnl|Hg17|chr8 (102280650-102280342) | |
| 415-723, gnl|loxAfr1|scaffold_8375 (93396-93084) | |
| 415-723, gnl|loxAfr1|scaffold_8375 (93378-93084) | |
| 415-723, gnl|mm7|chr15 (37111300-37111609) | |
| 415-723, gnl|Mm7|chr15 (37111617-37111312) | |
| 415-723, gnl|mm7|chr6 (65139283-65138995) | |
| 415-723, gnl|monDom2|scaffold_18 (340884-341180) | |
| 415-723, gnl|monDom2|scaffold_3 (62409395-62409082) | |
| 415-723, gnl|oryCun1|scaffold_192341 (1594-1284) | |
| 415-723, gnl|oryCun1|scaffold_192341 (1576-1282) | |
| 415-723, gnl|panTro1|chr1 (204481147-204481443) | |
| 415-723, gnl|panTro1|chr7 (104638663-104638975) | |
| 415-723, gnl|rheMac2|chr11 (111346573-111346278) | |
| 415-723, gnl|rheMac2|chr8 (103717502-103717814) | |
| 415-723, gnl|rn3|chr7 (72531856-72532169) | |
| 415-723, gnl|rn3|chr7 (72531874-72532169) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-313, gnl|bosTau2|chr14 (37762257-37762120) | |
| 176-313, gnl|canFam2|chr32 (41489094-41488955) | |
| 176-313, gnl|danRer3|chr19 (40402121-40402259) | |
| 176-313, gnl|dasNov1|scaffold_96619 (4435-4574) | |
| 176-313, gnl|echTel1|scaffold_278466 (1193-1054) | |
| 176-313, gnl|fr1|chrUn (11915007-11914868) | |
| 176-313, gnl|galGal2|chrUn (93665196-93665333) | |
| 176-313, gnl|hg17|chr1 (220670010-220670149) | |
| 176-313, gnl|Hg17|chr8 (102283148-102283011) | |
| 176-313, gnl|loxAfr1|scaffold_8375 (90421-90285) | |
| 176-313, gnl|Mm7|chr15 (37114510-37114373) | |
| 176-313, gnl|mm7|chr6 (65138884-65138744) | |
| 176-313, gnl|monDom2|scaffold_18 (341291-341430) | |
| 176-313, gnl|oryCun1|scaffold_192341 (1171-1034) | |
| 176-313, gnl|panTro1|chr1 (204481554-204481693) | |
| 176-313, gnl|rheMac2|chr11 (111346167-111346027) | |
| 176-313, gnl|rn3|chr7 (72534872-72535008) | |
| 176-313, gnl|tetNig1|chrUn_random (3266981-3266843) | |
| 176-313, gnl|xenTro1|scaffold_3 (5987854-5987715) | |
| 415-723, gnl|bosTau2|chr14 (37758856-37758547) | |
| 415-723, gnl|canFam2|chr13 (5987319-5987631) | |
| 415-723, gnl|canFam2|chr32 (41489670-41489383) | |
| 415-723, gnl|dasNov1|scaffold_96619 (4023-4324) | |
| 415-723, gnl|dasNov1|scaffold_96619 (4038-4324) | |
| 415-723, gnl|echTel1|scaffold_278466 (1597-1304) | |
| 415-723, gnl|echTel1|scaffold_280211 (3290-2979) | |
| 415-723, gnl|fr1|chrUn (11915795-11915565) | |
| 415-723, gnl|galGal2|chrUn (93663527-93663846) | |
| 415-723, gnl|galGal2|chrUn (93663545-93663846) | |
| 415-723, gnl|hg17|chr1 (220669603-220669899) | |
| 415-723, gnl|hg17|chr8 (102280330-102280642) | |
| 415-723, gnl|Hg17|chr8 (102280650-102280342) | |
| 415-723, gnl|loxAfr1|scaffold_8375 (93396-93084) | |
| 415-723, gnl|loxAfr1|scaffold_8375 (93378-93084) | |
| 415-723, gnl|mm7|chr15 (37111300-37111609) | |
| 415-723, gnl|Mm7|chr15 (37111617-37111312) | |
| 415-723, gnl|mm7|chr6 (65139283-65138995) | |
| 415-723, gnl|monDom2|scaffold_18 (340884-341180) | |
| 415-723, gnl|monDom2|scaffold_3 (62409395-62409082) | |
| 415-723, gnl|oryCun1|scaffold_192341 (1594-1284) | |
| 415-723, gnl|oryCun1|scaffold_192341 (1576-1282) | |
| 415-723, gnl|panTro1|chr1 (204481147-204481443) | |
| 415-723, gnl|panTro1|chr7 (104638663-104638975) | |
| 415-723, gnl|rheMac2|chr11 (111346573-111346278) | |
| 415-723, gnl|rheMac2|chr8 (103717502-103717814) | |
| 415-723, gnl|rn3|chr7 (72531856-72532169) | |
| 415-723, gnl|rn3|chr7 (72531874-72532169) |
| Expressed library(ies): 59 entry(ies) | More info |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
| fat (1.32685) | |
| mgp (0.692042) | |
| cje (0.660939) | |
| hea (0.613497) | |
| isp (0.601504) | |
| ldo (0.582016) | |
| rec (0.519211) | |
| pro (0.512033) | |
| tes (0.415628) | |
| che (0.408942) | |
| ste (0.405625) | |
| aor (0.390549) | |
| col (0.390016) | |
| ova (0.387397) | |
| thg (0.380373) | |
| gul (0.355177) | |
| fbs (0.350693) | |
| nco (0.323468) | |
| sme (0.305437) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| jej (0.296765) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| kid (0.259471) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| med (0.232504) | |
| jca (0.22792) | |
| spc (0.226732) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sag (0.182715) | |
| ton (0.1755) | |
| sin (0.174948) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cki (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (1.32685) | |
| mgp (0.692042) | |
| cje (0.660939) | |
| hea (0.613497) | |
| isp (0.601504) | |
| ldo (0.582016) | |
| rec (0.519211) | |
| pro (0.512033) | |
| tes (0.415628) | |
| che (0.408942) | |
| ste (0.405625) | |
| aor (0.390549) | |
| col (0.390016) | |
| ova (0.387397) | |
| thg (0.380373) | |
| gul (0.355177) | |
| fbs (0.350693) | |
| nco (0.323468) | |
| sme (0.305437) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| jej (0.296765) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| kid (0.259471) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| med (0.232504) | |
| jca (0.22792) | |
| spc (0.226732) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sag (0.182715) | |
| ton (0.1755) | |
| sin (0.174948) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cki (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| eje (0.0988338) |