Non-Coding RNA Search

Ss1.1-ruio06_e13.5

Sequence:


               
               CTACAATAAGCTCACCTTTGACCTGTTCTCATAGGGGCTTCCATAGCTTCTGTTCCACTG
AGGAGCCCTTGGGGCCCAACTCGGAAACAAGAACCAGAAATGTAATCTTTCTTTCTCAGG
CTGATCAAGCCAGACTACTACTGAAATGATTGGGAGTAAACCCTTAATTTTACTGCCCGT
TTCTACTTTTCCAAAAGTACCGCGTCATTTCGTTGATCACAGGTAAACGGCCCCTGTGCC
TTTTAGTCCAGCGAAGTCAAGCCACGGGGGACCTTGGGATGGTGGGGATTCACCAGGGGT
TTGTGGACGTCAGACTGAAAGCCTTAGTTGTGCCTCATTAAGCCTATAATTACACTCTGA
TTCCATGTGATTGCTGACATACGGCACTTGTCAAAATGCAATTTTTCTTTTTTTTTTTTT
TTTGGTGCAGATGATTGAACAAGGTCTTCCCTGTTTATTGGTGCAATGAAGTTTAGCAGA
TAAAATGGGGGAGGGGAAATTATCACCTTTAACAAGATTAATTTTTAAATGTTTTTATAT
ACTTGGAATAGTTAAATTGGTTTTGCTGAAAAAGAATTTCACCCTTGAGACACTATTTGA
ATGTTGGTTTCAATAAAGGTTCTTGAAATTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACAATAAGCTCACCTTTGACCTGTTCTCATAGGGGCTTCCATAGCTTCTGTTCCACTG
AGGAGCCCTTGGGGCCCAACTCGGAAACAAGAACCAGAAATGTAATCTTTCTTTCTCAGG
CTGATCAAGCCAGACTACTACTGAAATGATTGGGAGTAAACCCTTAATTTTACTGCCCGT
TTCTACTTTTCCAAAAGTACCGCGTCATTTCGTTGATCACAGGTAAACGGCCCCTGTGCC
TTTTAGTCCAGCGAAGTCAAGCCACGGGGGACCTTGGGATGGTGGGGATTCACCAGGGGT
TTGTGGACGTCAGACTGAAAGCCTTAGTTGTGCCTCATTAAGCCTATAATTACACTCTGA
TTCCATGTGATTGCTGACATACGGCACTTGTCAAAATGCAATTTTTCTTTTTTTTTTTTT
TTTGGTGCAGATGATTGAACAAGGTCTTCCCTGTTTATTGGTGCAATGAAGTTTAGCAGA
TAAAATGGGGGAGGGGAAATTATCACCTTTAACAAGATTAATTTTTAAATGTTTTTATAT
ACTTGGAATAGTTAAATTGGTTTTGCTGAAAAAGAATTTCACCCTTGAGACACTATTTGA
ATGTTGGTTTCAATAAAGGTTCTTGAAATTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-633, gnl|bosTau2|chr25 (14409303-14409905)
               

               
               7-633, gnl|Hg17|chr16 (15038466-15039044)
               

               
               7-633, gnl|Mm7|chr1 (26205124-26201411)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-633, gnl|bosTau2|chr25 (14409303-14409905)
               

               
               7-633, gnl|Hg17|chr16 (15038466-15039044)
               

               
               7-633, gnl|Mm7|chr1 (26205124-26201411)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               sin (0.349895)
               

               
               nca (0.273748)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               nca (0.273748)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	7-633, gnl\|bosTau2\|chr25 (14409303-14409905)
	7-633, gnl\|Hg17\|chr16 (15038466-15039044)
	7-633, gnl\|Mm7\|chr1 (26205124-26201411)

	sin (0.349895)
	nca (0.273748)
	lyg (0.266205)
	kid (0.259471)
	aor (0.195274)
	sag (0.182715)
	rec (0.17307)
	cut (0.169924)
	fhi (0.169578)
	cje (0.165235)
	csp (0.161186)
	fco (0.157208)
	pty (0.142714)
	csk (0.140746)
	ste (0.135208)
	sug (0.127291)
	thg (0.126791)