Non-Coding RNA Search

Ss1.1-ruio06_f24.5.5

Sequence:


               
               TTTTCGTCCTTGTCGGGCCATCAAGATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGC
TAAGTTCCGGATTTCCTTGGGTCTTCCGGTTGGAGCAGTGATCAACTGTGCTGATAACAC
GGGAGCCAAAAACCTCTATATCATTTCTGTGAAGGGGATCAAGGGACGATTGAATAGACT
TCCTGCTGCTGGTGTGGGTGACATGGTGATGGCCACAGTCAAGAAAGGGAAACCAGAGCT
CAGAAAGAAGGTACATCCAGCAGTGGTAATTCGACAACGAAAGTCATACCGGAGAAAAGA
TGGAGTGTTTCTATATTTTGAAGATAATGCAGGGGTCATAGTAAATAATAAAGGCGAGAT
GAAAGGTTCTGCCATCACAGGACCAGTTGCAAAGGAATGTGCAGACTTGTGGCCCAGAAT
TGCATCCAATGCTGGTAGCATTGCGTGATTCTTCAGTGCATTTGTAAAAAGTAAATAAAA
ATGGCTCTAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CCACATATTTACCTTGGTATTTCCCCAGCAAGTTCAGCAGAGAGTTACAGACCACCTCAC
ATACCTATGAAAGCAAAAGCTTATCCTTTTAGAATACCCAGGTTCATGGTGTGTTCCTCA
GCTCTTACTATTCCTTTGTGCTTTCTACCAGGAATTCGCTAAGTCTCATCTTCAGCTCAC
AACCTTGTTGACACCTTTCCTTACCCCAATCTCCCCTCTCCACATAACCCTTAAACCAGG
TGGTAATTTGTGCATGTGACATTTAGAGCTGTCTCTTCTACTTGAGTTCCATAAGCATTG
TCTGTAGATAATAAATTCCTTGGCTGCAAATGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCGTCCTTGTCGGGCCATCAAGATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGC
TAAGTTCCGGATTTCCTTGGGTCTTCCGGTTGGAGCAGTGATCAACTGTGCTGATAACAC
GGGAGCCAAAAACCTCTATATCATTTCTGTGAAGGGGATCAAGGGACGATTGAATAGACT
TCCTGCTGCTGGTGTGGGTGACATGGTGATGGCCACAGTCAAGAAAGGGAAACCAGAGCT
CAGAAAGAAGGTACATCCAGCAGTGGTAATTCGACAACGAAAGTCATACCGGAGAAAAGA
TGGAGTGTTTCTATATTTTGAAGATAATGCAGGGGTCATAGTAAATAATAAAGGCGAGAT
GAAAGGTTCTGCCATCACAGGACCAGTTGCAAAGGAATGTGCAGACTTGTGGCCCAGAAT
TGCATCCAATGCTGGTAGCATTGCGTGATTCTTCAGTGCATTTGTAAAAAGTAAATAAAA
ATGGCTCTAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CCACATATTTACCTTGGTATTTCCCCAGCAAGTTCAGCAGAGAGTTACAGACCACCTCAC
ATACCTATGAAAGCAAAAGCTTATCCTTTTAGAATACCCAGGTTCATGGTGTGTTCCTCA
GCTCTTACTATTCCTTTGTGCTTTCTACCAGGAATTCGCTAAGTCTCATCTTCAGCTCAC
AACCTTGTTGACACCTTTCCTTACCCCAATCTCCCCTCTCCACATAACCCTTAAACCAGG
TGGTAATTTGTGCATGTGACATTTAGAGCTGTCTCTTCTACTTGAGTTCCATAAGCATTG
TCTGTAGATAATAAATTCCTTGGCTGCAAATGAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5M8X1_XENTR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5M8X1_XENTR

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               1-501, gnl|bosTau2|chr3 (51464525-51465025)
               

               
               1-501, gnl|Mm7|chr6 (66857554-66857048)
               


               
               225-327, gnl|bosTau2|chr15 (29913164-29913266)
               

               
               225-327, gnl|Hg17|chr21 (29292017-29291930)
               

               
               225-327, gnl|Mm7|chr6 (66857318-66857231)
               


               
               364-482, gnl|bosTau2|chr19 (41596436-41596552)
               

               
               364-482, gnl|Hg17|chr17 (34259995-34259859)
               

               
               364-482, gnl|Mm7|chr11 (97887205-97887086)
               


               
               654-868, gnl|bosTau2|chr19 (41593589-41593809)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-501, gnl|bosTau2|chr3 (51464525-51465025)
               

               
               1-501, gnl|Mm7|chr6 (66857554-66857048)
               


               
               225-327, gnl|bosTau2|chr15 (29913164-29913266)
               

               
               225-327, gnl|Hg17|chr21 (29292017-29291930)
               

               
               225-327, gnl|Mm7|chr6 (66857318-66857231)
               


               
               364-482, gnl|bosTau2|chr19 (41596436-41596552)
               

               
               364-482, gnl|Hg17|chr17 (34259995-34259859)
               

               
               364-482, gnl|Mm7|chr11 (97887205-97887086)
               


               
               654-868, gnl|bosTau2|chr19 (41593589-41593809)

Expressed library(ies): 83 entry(ies)

More info

Expressed library(ies): 83 entry(ies)

Help | Less info


               
               nep (5.33382)
               

               
               eje (4.94169)
               

               
               nca (4.79058)
               

               
               elu (4.62428)
               

               
               ova (4.26136)
               

               
               nlu (3.83362)
               

               
               che (3.68048)
               

               
               med (3.48756)
               

               
               sto (3.23683)
               

               
               hlv (3.06364)
               

               
               nmm (3.05445)
               

               
               eru (3.0012)
               

               
               nco (2.91121)
               

               
               cbe (2.63158)
               

               
               lnt (2.56155)
               

               
               cut (2.54885)
               

               
               amn (2.50627)
               

               
               col (2.34009)
               

               
               csk (2.25194)
               

               
               rec (2.24991)
               

               
               eep (2.20615)
               

               
               fce (2.17273)
               

               
               pty (2.14072)
               

               
               fty (2.11008)
               

               
               mga (2.08267)
               

               
               ece (2.06375)
               

               
               ssp (2.0328)
               

               
               cst (1.96051)
               

               
               csp (1.93424)
               

               
               spc (1.92722)
               

               
               cje (1.81758)
               

               
               aor (1.75747)
               

               
               ill (1.75593)
               

               
               jca (1.7094)
               

               
               ton (1.5795)
               

               
               sme (1.52718)
               

               
               ese (1.51803)
               

               
               jej (1.48383)
               

               
               hea (1.43149)
               

               
               ebs (1.41961)
               

               
               thg (1.3947)
               

               
               mgp (1.38408)
               

               
               duo (1.38241)
               

               
               eli (1.36633)
               

               
               mcp (1.36519)
               

               
               nms (1.28315)
               

               
               ecc (1.26539)
               

               
               fli (1.21729)
               

               
               cag (1.20956)
               

               
               ute (1.06228)
               

               
               fbs (1.05208)
               

               
               bfe (1.049)
               

               
               pro (1.02407)
               

               
               eye (1.02302)
               

               
               nbm (0.993246)
               

               
               cte (0.87822)
               

               
               sag (0.730861)
               

               
               hyp (0.714184)
               

               
               lyg (0.665513)
               

               
               nje (0.66368)
               

               
               mas (0.630915)
               

               
               fcc (0.593354)
               

               
               kid (0.518941)
               

               
               fhi (0.508733)
               

               
               bla (0.373042)
               

               
               mgm (0.360685)
               

               
               pgl (0.35545)
               

               
               gul (0.355177)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 83 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (5.33382)
               

               
               eje (4.94169)
               

               
               nca (4.79058)
               

               
               elu (4.62428)
               

               
               ova (4.26136)
               

               
               nlu (3.83362)
               

               
               che (3.68048)
               

               
               med (3.48756)
               

               
               sto (3.23683)
               

               
               hlv (3.06364)
               

               
               nmm (3.05445)
               

               
               eru (3.0012)
               

               
               nco (2.91121)
               

               
               cbe (2.63158)
               

               
               lnt (2.56155)
               

               
               cut (2.54885)
               

               
               amn (2.50627)
               

               
               col (2.34009)
               

               
               csk (2.25194)
               

               
               rec (2.24991)
               

               
               eep (2.20615)
               

               
               fce (2.17273)
               

               
               pty (2.14072)
               

               
               fty (2.11008)
               

               
               mga (2.08267)
               

               
               ece (2.06375)
               

               
               ssp (2.0328)
               

               
               cst (1.96051)
               

               
               csp (1.93424)
               

               
               spc (1.92722)
               

               
               cje (1.81758)
               

               
               aor (1.75747)
               

               
               ill (1.75593)
               

               
               jca (1.7094)
               

               
               ton (1.5795)
               

               
               sme (1.52718)
               

               
               ese (1.51803)
               

               
               jej (1.48383)
               

               
               hea (1.43149)
               

               
               ebs (1.41961)
               

               
               thg (1.3947)
               

               
               mgp (1.38408)
               

               
               duo (1.38241)
               

               
               eli (1.36633)
               

               
               mcp (1.36519)
               

               
               nms (1.28315)
               

               
               ecc (1.26539)
               

               
               fli (1.21729)
               

               
               cag (1.20956)
               

               
               ute (1.06228)
               

               
               fbs (1.05208)
               

               
               bfe (1.049)
               

               
               pro (1.02407)
               

               
               eye (1.02302)
               

               
               nbm (0.993246)
               

               
               cte (0.87822)
               

               
               sag (0.730861)
               

               
               hyp (0.714184)
               

               
               lyg (0.665513)
               

               
               nje (0.66368)
               

               
               mas (0.630915)
               

               
               fcc (0.593354)
               

               
               kid (0.518941)
               

               
               fhi (0.508733)
               

               
               bla (0.373042)
               

               
               mgm (0.360685)
               

               
               pgl (0.35545)
               

               
               gul (0.355177)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	1-501, gnl\|bosTau2\|chr3 (51464525-51465025)
	1-501, gnl\|Mm7\|chr6 (66857554-66857048)

	225-327, gnl\|bosTau2\|chr15 (29913164-29913266)
	225-327, gnl\|Hg17\|chr21 (29292017-29291930)
	225-327, gnl\|Mm7\|chr6 (66857318-66857231)

	364-482, gnl\|bosTau2\|chr19 (41596436-41596552)
	364-482, gnl\|Hg17\|chr17 (34259995-34259859)
	364-482, gnl\|Mm7\|chr11 (97887205-97887086)

	654-868, gnl\|bosTau2\|chr19 (41593589-41593809)

	nep (5.33382)
	eje (4.94169)
	nca (4.79058)
	elu (4.62428)
	ova (4.26136)
	nlu (3.83362)
	che (3.68048)
	med (3.48756)
	sto (3.23683)
	hlv (3.06364)
	nmm (3.05445)
	eru (3.0012)
	nco (2.91121)
	cbe (2.63158)
	lnt (2.56155)
	cut (2.54885)
	amn (2.50627)
	col (2.34009)
	csk (2.25194)
	rec (2.24991)
	eep (2.20615)
	fce (2.17273)
	pty (2.14072)
	fty (2.11008)
	mga (2.08267)
	ece (2.06375)
	ssp (2.0328)
	cst (1.96051)
	csp (1.93424)
	spc (1.92722)
	cje (1.81758)
	aor (1.75747)
	ill (1.75593)
	jca (1.7094)
	ton (1.5795)
	sme (1.52718)
	ese (1.51803)
	jej (1.48383)
	hea (1.43149)
	ebs (1.41961)
	thg (1.3947)
	mgp (1.38408)
	duo (1.38241)
	eli (1.36633)
	mcp (1.36519)
	nms (1.28315)
	ecc (1.26539)
	fli (1.21729)
	cag (1.20956)
	ute (1.06228)
	fbs (1.05208)
	bfe (1.049)
	pro (1.02407)
	eye (1.02302)
	nbm (0.993246)
	cte (0.87822)
	sag (0.730861)
	hyp (0.714184)
	lyg (0.665513)
	nje (0.66368)
	mas (0.630915)
	fcc (0.593354)
	kid (0.518941)
	fhi (0.508733)
	bla (0.373042)
	mgm (0.360685)
	pgl (0.35545)
	gul (0.355177)
	ski (0.29347)
	lin (0.291206)
	cga (0.279096)
	pla (0.267344)
	sug (0.254582)
	tra (0.246184)
	cly (0.241284)
	pan (0.23596)
	tes (0.207814)
	cmu (0.186393)
	lun (0.150489)
	isp (0.150376)
	spl (0.143184)
	clu (0.119646)
	ldo (0.0970026)