Non-Coding RNA Search

Ss1.1-ruio06_f4.5

Sequence:


               
               TCTGATGAAAGCTGTGGGCTCCCTTTCCAGAAAAATGCACGTCAATACATACACATAAAA
TGTTGCATGCAGTTTAGGGATTTGGGACCTGTTGAAACCTGTCACCAACTCTTAGTTAAG
AACCTCTGTCCTATAAGAACACTGATATGTTAAACTAAGAACTTTGTTTTAAATTTACTG
ATTAGTACTCAAATTAGCACATCTTGTATAAACACTGATAATTTATGATGGGAAAAGGTC
TGTACCATGTGATAAGATATCCTTTTGAATGCCTCTCTTGTGGGTACAGAACTCAGACAT
TTTAAACAAACCATTTTGAGGGCACTGAAATAGATGTTGGCTTGTTAACAGGTTTGATAT
GGAAATATTTCTGAAGGACTTCTACTCAGAGAATTGTAAGAAAATGCACTATATAAGATG
GCATTCTTCACTTCATGGAACATTTGATTAGTCCTTTAAAATTCTCTGAAACATATCAGT
TCAAGAACTTTAACTCAGTACTCAAATTTTAAAATTATCTCTCTTGCTCCCAGGCTTTCT
CAGTCAGATTTATTTAAGTTTCCGCTTAGTTGTTTTACTTCTGGACTATGGTGCAAAACA
GTACAAAACCAACTTTGTTACGTGTACTTTGTAGGAAAACTAAGGTGCTGTCTTCACCAC
CACTACCCGCAGCCACCACAAAATTTGTGTTGCCCTTATTCCTCAAATGTAACAAACACT
ACAAATTTTATATTCTTTTAAATTTCCTCTTAATCGTATAAGCTTTTTGTATTTATCTGG
AGCAGTGTACAAGCCTTTAGCATCTGCATTTTTAACAGTTTGGATGTACTTATTAGCTGT
CTTATTCCCAAACTATATCCAGTTCTTCCCGTATAGAATTTGGTGCTTCCTGACCAAAAA
GGTGAGAATGACATCAAAAATCTATATGCTCTCTGTTGAAATGGAGTGAAAACATTGATT
ATTCATGTTTTCTTTTTAAAATCATTTTCCCACTCATTAAAAAAACTTGCTGTCTTTCTT
ATACTCACCCCCTTTTATGCATATCAATAGTATTTATGGAATGTGTTCTATAATTGTGTA
ATTGTAGATACAGTTACGTATTGTCCAGTGATGTCCTAAGGCAGGCCTTATTGCTGTATC
TTTTCTACCTTATTTGTAATAGAAACTATAGAATGTATGACTAAGAAGTCACTTTGAGAT
TGACTTTTTTAAAAAGTTATTACCTTCTGCTGTTGCGAAGTGCAAAACTGTGAGTGGAAA
TGTTTTATTCTGACTTAATAATATGTTGAAATTAGAGAATACAGTGGGAGGATTTCTAGA
TATTGCTGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGATGAAAGCTGTGGGCTCCCTTTCCAGAAAAATGCACGTCAATACATACACATAAAA
TGTTGCATGCAGTTTAGGGATTTGGGACCTGTTGAAACCTGTCACCAACTCTTAGTTAAG
AACCTCTGTCCTATAAGAACACTGATATGTTAAACTAAGAACTTTGTTTTAAATTTACTG
ATTAGTACTCAAATTAGCACATCTTGTATAAACACTGATAATTTATGATGGGAAAAGGTC
TGTACCATGTGATAAGATATCCTTTTGAATGCCTCTCTTGTGGGTACAGAACTCAGACAT
TTTAAACAAACCATTTTGAGGGCACTGAAATAGATGTTGGCTTGTTAACAGGTTTGATAT
GGAAATATTTCTGAAGGACTTCTACTCAGAGAATTGTAAGAAAATGCACTATATAAGATG
GCATTCTTCACTTCATGGAACATTTGATTAGTCCTTTAAAATTCTCTGAAACATATCAGT
TCAAGAACTTTAACTCAGTACTCAAATTTTAAAATTATCTCTCTTGCTCCCAGGCTTTCT
CAGTCAGATTTATTTAAGTTTCCGCTTAGTTGTTTTACTTCTGGACTATGGTGCAAAACA
GTACAAAACCAACTTTGTTACGTGTACTTTGTAGGAAAACTAAGGTGCTGTCTTCACCAC
CACTACCCGCAGCCACCACAAAATTTGTGTTGCCCTTATTCCTCAAATGTAACAAACACT
ACAAATTTTATATTCTTTTAAATTTCCTCTTAATCGTATAAGCTTTTTGTATTTATCTGG
AGCAGTGTACAAGCCTTTAGCATCTGCATTTTTAACAGTTTGGATGTACTTATTAGCTGT
CTTATTCCCAAACTATATCCAGTTCTTCCCGTATAGAATTTGGTGCTTCCTGACCAAAAA
GGTGAGAATGACATCAAAAATCTATATGCTCTCTGTTGAAATGGAGTGAAAACATTGATT
ATTCATGTTTTCTTTTTAAAATCATTTTCCCACTCATTAAAAAAACTTGCTGTCTTTCTT
ATACTCACCCCCTTTTATGCATATCAATAGTATTTATGGAATGTGTTCTATAATTGTGTA
ATTGTAGATACAGTTACGTATTGTCCAGTGATGTCCTAAGGCAGGCCTTATTGCTGTATC
TTTTCTACCTTATTTGTAATAGAAACTATAGAATGTATGACTAAGAAGTCACTTTGAGAT
TGACTTTTTTAAAAAGTTATTACCTTCTGCTGTTGCGAAGTGCAAAACTGTGAGTGGAAA
TGTTTTATTCTGACTTAATAATATGTTGAAATTAGAGAATACAGTGGGAGGATTTCTAGA
TATTGCTGCTGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               644-739, - strand, RNAz p=0.609986
               

               
               902-1010, - strand, RNAz p=0.749486

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               644-739, - strand, RNAz p=0.609986
               

               
               902-1010, - strand, RNAz p=0.749486

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1332, gnl|bosTau2|chr7 (68183162-68184457)
               

               
               1-1332, gnl|Hg17|chr6 (150023027-150021409)
               

               
               1-1332, gnl|Mm7|chr10 (7415082-7416289)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1332, gnl|bosTau2|chr7 (68183162-68184457)
               

               
               1-1332, gnl|Hg17|chr6 (150023027-150021409)
               

               
               1-1332, gnl|Mm7|chr10 (7415082-7416289)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ret (0.257467)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	644-739, - strand, RNAz p=0.609986
	902-1010, - strand, RNAz p=0.749486

	1-1332, gnl\|bosTau2\|chr7 (68183162-68184457)
	1-1332, gnl\|Hg17\|chr6 (150023027-150021409)
	1-1332, gnl\|Mm7\|chr10 (7415082-7416289)

	ret (0.257467)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	ste (0.135208)
	kid (0.129735)
	pgl (0.118483)
	spc (0.113366)
	cty (0.10408)