Non-Coding RNA Search

Ss1.1-ruio06_f7.5

Sequence:


               
               TTTTCCAACAAAGTTTCAAATTTTCTCTTATTTATTTCAGTAGTTTCTTTCTTGACCTAT
TCAATCTGGGCTAGCAGTTGTAAAAACAAAGCAGAATGCAATGAACTCCACCCATCTGTT
TCTGTGGTACAGATTTTAGCCTTCATCCTAATAAGGAATATCCCTGGATATGCTCGTTCA
GTTTACAGTTCATTTTTTGCTTGGTTTGGAAGAATTTCATTAGAGCTATTTATTTGCCAA
TATCACATATGGCTGGCAGCAGACACAAGGGGTATCTTGGTACTCATACCTGGAAACCCG
ATGCTCAACATCATTGTCAGCACTTTCATATTTGTTTGTGTGGCACACGAAATTTCACAG
ATCACTAATGATCTTGCACAGATTATTATTCCTAAGGATAATTCATCTCTCTTGAAAAGG
TTGGCATGTATAGCTGCATTTTTTTGTGGACTCCTCATCTTATCATCCATTCAAGATAAA
TCAAGACATTAGGTTCCTAAAATACTAAAAAATTGAAACCAAGTTAATTTTGTGTCTACC
TAGAGGAGAACAGCATCTATCTGGAGACATAAATGTATAAGTAAGTAAAGACTTGTGTGG
CAAGAGGACAGGTCAGTGATATCTGTTGAACATGTGTGGTTGTATATATTGAAAATGTAC
ATAACCAATATGAAATACTGAAAAAAACTGATGAGGCAGAGTGCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCAACAAAGTTTCAAATTTTCTCTTATTTATTTCAGTAGTTTCTTTCTTGACCTAT
TCAATCTGGGCTAGCAGTTGTAAAAACAAAGCAGAATGCAATGAACTCCACCCATCTGTT
TCTGTGGTACAGATTTTAGCCTTCATCCTAATAAGGAATATCCCTGGATATGCTCGTTCA
GTTTACAGTTCATTTTTTGCTTGGTTTGGAAGAATTTCATTAGAGCTATTTATTTGCCAA
TATCACATATGGCTGGCAGCAGACACAAGGGGTATCTTGGTACTCATACCTGGAAACCCG
ATGCTCAACATCATTGTCAGCACTTTCATATTTGTTTGTGTGGCACACGAAATTTCACAG
ATCACTAATGATCTTGCACAGATTATTATTCCTAAGGATAATTCATCTCTCTTGAAAAGG
TTGGCATGTATAGCTGCATTTTTTTGTGGACTCCTCATCTTATCATCCATTCAAGATAAA
TCAAGACATTAGGTTCCTAAAATACTAAAAAATTGAAACCAAGTTAATTTTGTGTCTACC
TAGAGGAGAACAGCATCTATCTGGAGACATAAATGTATAAGTAAGTAAAGACTTGTGTGG
CAAGAGGACAGGTCAGTGATATCTGTTGAACATGTGTGGTTGTATATATTGAAAATGTAC
ATAACCAATATGAAATACTGAAAAAAACTGATGAGGCAGAGTGCATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874802|ref|XP_611654.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874802|ref|XP_611654.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-333, + strand, RNAz p=0.935641

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-333, + strand, RNAz p=0.935641

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               215-706, gnl|bosTau2|chr4 (1500775-1501264)
               

               
               215-706, gnl|Hg17|chr7 (93829444-93829946)
               

               
               215-706, gnl|Mm7|chr6 (4594727-4595210)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-706, gnl|bosTau2|chr4 (1500775-1501264)
               

               
               215-706, gnl|Hg17|chr7 (93829444-93829946)
               

               
               215-706, gnl|Mm7|chr6 (4594727-4595210)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               liv (0.292569)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

	215-706, gnl\|bosTau2\|chr4 (1500775-1501264)
	215-706, gnl\|Hg17\|chr7 (93829444-93829946)
	215-706, gnl\|Mm7\|chr6 (4594727-4595210)

	liv (0.292569)
	lin (0.145603)
	ste (0.135208)
	kid (0.129735)
	eje (0.0988338)