Non-Coding RNA Search

Ss1.1-ruio06_i14.5

Sequence:


               
               AAACAAAGCTCTGAAAGCCTACATATTGGATGATATCAATCTTGGTGGATACTTTGCTCA
TAAATTTAATGATCGCACAGCTCCGAAGTTTGGCCTCTATCGTTATGCTGCAAATCAGTT
TGAGCCAAAACCATCCATGAAACATTACAGGAAAATTATTGACAACAATGGCTTCCCAGA
TCCTGAAACTCTGGGAAGATTTTGTCCAGAAGAATTTGCCCTGTGTACTGAGTGCAGCTT
TTTTCATACCCGAAAGTCTTTGCTGGCTTTCATAGCTTTTCTATTTTTTGCCTTTGTTAT
TTCTCTTTCTCTTATTTTTTACTACTCTAAGAAAGGCAGAAAGAATTACAAATAGTCTTG
AACTTTTTTCCTATTCATTTGAAATAATTATGCACACATACCAGCTGTTAATCATTTGCA
CTTCTCAATGTTGTGAAACTATAGATTTTATTTATCTGACTTCTAGAAAACCTTTTTGTG
ACATCTGACAGAGGTTTAAAATGAAGCATAAGTGATTGTAAAATAATGAATAATGCGGAT
AGTGCCTAGATTTGTTCTTTTTTTCTTGGGAGGGTATGTTAAAAAAACCAGGGGCCATCC
ATTTTTGCAACACATTCTATAACAGAAGCATGAGAAATGGGAATCGGTCTGTAATGTTTT
TACAGAAATTGAATGAAAAGATTAAGAATATTTTATCTGTGCACATTCCTAAATGTAGTG
TTTATCTCGACATCATAATTGCAAGTGTTGGAATCAAAAGTTAGTCCCAAGTAACTCTCT
GTCAACTGCCATAGTATGCCTAATGGTCTTTGTTGAACCAAGTTTCCCTTGAAAAAGAAG
ATGACGGAATAATAGAACAGATGACAAAAGGCCCTAGGCTGCAACATTTCTTTTTAAAAG
CAGTGTTTCTATCAAATGCTGCAAATATAAATTTACATATCTGACTAATGATATGCTTAA
CAGAACAGATTACAGAACTCTGTATTTTATGTATAAAATATATTTATATTTTGAGGCACT
CTAAACCCCAGGTCCTTGAAGTCTTTGTGTCACTGGACCCTGCACTTGGGGACTTTCAAT
AAATGTGTACAGAAAGATAAGCATGAACCATGCAATGTTGGGCCCTTGAGGAAGCATAAA
CTGACTGAAATGCATTGTACTACGGTGGCTGGGGGCGGGGAGTGGAGAGGAGGAAAAAGT
ACTTGTTAGTAGCAAGATTATGATTAATTTGATTATAAACATTTATTTAGAGCAGATCTT
GGAATGAATGGGTTGACCTTTCCTGAGAGAGTAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAAAGCTCTGAAAGCCTACATATTGGATGATATCAATCTTGGTGGATACTTTGCTCA
TAAATTTAATGATCGCACAGCTCCGAAGTTTGGCCTCTATCGTTATGCTGCAAATCAGTT
TGAGCCAAAACCATCCATGAAACATTACAGGAAAATTATTGACAACAATGGCTTCCCAGA
TCCTGAAACTCTGGGAAGATTTTGTCCAGAAGAATTTGCCCTGTGTACTGAGTGCAGCTT
TTTTCATACCCGAAAGTCTTTGCTGGCTTTCATAGCTTTTCTATTTTTTGCCTTTGTTAT
TTCTCTTTCTCTTATTTTTTACTACTCTAAGAAAGGCAGAAAGAATTACAAATAGTCTTG
AACTTTTTTCCTATTCATTTGAAATAATTATGCACACATACCAGCTGTTAATCATTTGCA
CTTCTCAATGTTGTGAAACTATAGATTTTATTTATCTGACTTCTAGAAAACCTTTTTGTG
ACATCTGACAGAGGTTTAAAATGAAGCATAAGTGATTGTAAAATAATGAATAATGCGGAT
AGTGCCTAGATTTGTTCTTTTTTTCTTGGGAGGGTATGTTAAAAAAACCAGGGGCCATCC
ATTTTTGCAACACATTCTATAACAGAAGCATGAGAAATGGGAATCGGTCTGTAATGTTTT
TACAGAAATTGAATGAAAAGATTAAGAATATTTTATCTGTGCACATTCCTAAATGTAGTG
TTTATCTCGACATCATAATTGCAAGTGTTGGAATCAAAAGTTAGTCCCAAGTAACTCTCT
GTCAACTGCCATAGTATGCCTAATGGTCTTTGTTGAACCAAGTTTCCCTTGAAAAAGAAG
ATGACGGAATAATAGAACAGATGACAAAAGGCCCTAGGCTGCAACATTTCTTTTTAAAAG
CAGTGTTTCTATCAAATGCTGCAAATATAAATTTACATATCTGACTAATGATATGCTTAA
CAGAACAGATTACAGAACTCTGTATTTTATGTATAAAATATATTTATATTTTGAGGCACT
CTAAACCCCAGGTCCTTGAAGTCTTTGTGTCACTGGACCCTGCACTTGGGGACTTTCAAT
AAATGTGTACAGAAAGATAAGCATGAACCATGCAATGTTGGGCCCTTGAGGAAGCATAAA
CTGACTGAAATGCATTGTACTACGGTGGCTGGGGGCGGGGAGTGGAGAGGAGGAAAAAGT
ACTTGTTAGTAGCAAGATTATGATTAATTTGATTATAAACATTTATTTAGAGCAGATCTT
GGAATGAATGGGTTGACCTTTCCTGAGAGAGTAAGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               16-1296, gnl|bosTau2|chr11 (43923735-43922464)
               

               
               16-1296, gnl|Hg17|chr13 (32535984-32537261)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-1296, gnl|bosTau2|chr11 (43923735-43922464)
               

               
               16-1296, gnl|Hg17|chr13 (32535984-32537261)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               kid (0.259471)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               ecc (0.115035)

	16-1296, gnl\|bosTau2\|chr11 (43923735-43922464)
	16-1296, gnl\|Hg17\|chr13 (32535984-32537261)