Ss1.1-ruio06_j17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCAGAGGAAGAAGAGCTCTTCAGACAAGGAGAATTGAACAAAGGGAGAAGGGTTGCCT TCAGCTCCGCATCGTTACTGAAAATGGCTCCTACTGCTGAGGAGAGGACAACCATACATG ACATGTTTCTTAGCACGCTGGATCCAAAGACTATAAGCTTTCGAAGTCGAGTTTTGCCTC CTAATGGGGTGTGGATGGAGAGTTCAAAACTGAAGAGCTTGGATATTTGCCACCCTCAGG AACGGAACATTTTCAATCGGATCTTTGGTGGCTTCCTTATGAGAAGAGCGTATGAACTTG GATGGGCTACTGCTTGTAACTTTGGTGGTTCCCGACCGTTTATAGTAGCCGTGGATGATA TCATGTTTCAGAAACCTGTTGAGGTTGGATCATTGCTGTTTCTTTCTTCACAGGTTTGCT TTACTCAGGAGAATTACATTCAAGTCAGAGTACACAGTGAGGTGGCCTCTCTTCAGGATA AAGAGCATATGACTACCAATGTTTTTCATTTCACCTTCATGTCGGAAAAAGAAGTGCCCT TGGTTTTCCCCAGAACATATGGAGAGTCCATGCTGTATTTAGATGGACAGCGCCATTTCA GCTCCATGCACTCACTGGAGACCTTGAAATAAGACTACCACGTGGAGCCCTAGGAAGACC CTGCTTGTTGAAGACCAGTGCCGGGCAGTAACACAGTGCCTGATGAAGGCCTGAGCAAGT GTATTGGTTTCAGTGTTTATTCTTATCCTCCCTAGAGAAGAAGAATGTATTCAGCTTTTA GGATGATCAGAAGAGTGGAACGAGAGAATGGCTGGGTGGGGGCAGAAGGAAAAAGATTTA TTAAATAATAAATACTTTAAAGACTTTAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCAGAGGAAGAAGAGCTCTTCAGACAAGGAGAATTGAACAAAGGGAGAAGGGTTGCCT TCAGCTCCGCATCGTTACTGAAAATGGCTCCTACTGCTGAGGAGAGGACAACCATACATG ACATGTTTCTTAGCACGCTGGATCCAAAGACTATAAGCTTTCGAAGTCGAGTTTTGCCTC CTAATGGGGTGTGGATGGAGAGTTCAAAACTGAAGAGCTTGGATATTTGCCACCCTCAGG AACGGAACATTTTCAATCGGATCTTTGGTGGCTTCCTTATGAGAAGAGCGTATGAACTTG GATGGGCTACTGCTTGTAACTTTGGTGGTTCCCGACCGTTTATAGTAGCCGTGGATGATA TCATGTTTCAGAAACCTGTTGAGGTTGGATCATTGCTGTTTCTTTCTTCACAGGTTTGCT TTACTCAGGAGAATTACATTCAAGTCAGAGTACACAGTGAGGTGGCCTCTCTTCAGGATA AAGAGCATATGACTACCAATGTTTTTCATTTCACCTTCATGTCGGAAAAAGAAGTGCCCT TGGTTTTCCCCAGAACATATGGAGAGTCCATGCTGTATTTAGATGGACAGCGCCATTTCA GCTCCATGCACTCACTGGAGACCTTGAAATAAGACTACCACGTGGAGCCCTAGGAAGACC CTGCTTGTTGAAGACCAGTGCCGGGCAGTAACACAGTGCCTGATGAAGGCCTGAGCAAGT GTATTGGTTTCAGTGTTTATTCTTATCCTCCCTAGAGAAGAAGAATGTATTCAGCTTTTA GGATGATCAGAAGAGTGGAACGAGAGAATGGCTGGGTGGGGGCAGAAGGAAAAAGATTTA TTAAATAATAAATACTTTAAAGACTTTAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 37-149, gnl|bosTau2|chrX (37486675-37486563) | |
| 37-149, gnl|canFam2|chrX (19352527-19352681) | |
| 37-149, gnl|danRer3|chr24 (18986594-18986744) | |
| 37-149, gnl|dasNov1|scaffold_70108 (9362-9519) | |
| 37-149, gnl|echTel1|scaffold_313039 (13194-13027) | |
| 37-149, gnl|fr1|chrUn (157292846-157292704) | |
| 37-149, gnl|galGal2|chr1 (111698431-111698303) | |
| 37-149, gnl|hg17|chrX (23484389-23484539) | |
| 37-149, gnl|Hg17|chrX (23484513-23484401) | |
| 37-149, gnl|loxAfr1|scaffold_53273 (9494-9651) | |
| 37-149, gnl|mm7|chrX (150096399-150096246) | |
| 37-149, gnl|Mm7|chrX (150096269-150096381) | |
| 37-149, gnl|monDom2|scaffold_48 (8360329-8360185) | |
| 37-149, gnl|oryCun1|scaffold_210938 (18878-19032) | |
| 37-149, gnl|panTro1|chrX (24317933-24318083) | |
| 37-149, gnl|rheMac2|chrX (21507652-21507802) | |
| 37-149, gnl|rn3|chrX (61604422-61604576) | |
| 37-149, gnl|tetNig1|chrUn_random (52936557-52936676) | |
| 563-870, gnl|bosTau2|chrX (37484250-37483945) | |
| 563-870, gnl|canFam2|chrX (19349428-19349677) | |
| 563-870, gnl|dasNov1|scaffold_70108 (7052-7294) | |
| 563-870, gnl|echTel1|scaffold_313039 (15981-15723) | |
| 563-870, gnl|hg17|chrX (23481408-23481666) | |
| 563-870, gnl|Hg17|chrX (23481758-23481445) | |
| 563-870, gnl|loxAfr1|scaffold_111896 (1035-1287) | |
| 563-870, gnl|mm7|chrX (150098790-150098544) | |
| 563-870, gnl|Mm7|chrX (150098450-150098760) | |
| 563-870, gnl|panTro1|chrX (24314949-24315207) | |
| 563-870, gnl|rheMac2|chrX (21505033-21505293) | |
| 563-870, gnl|rn3|chrX (61601763-61602002) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-149, gnl|bosTau2|chrX (37486675-37486563) | |
| 37-149, gnl|canFam2|chrX (19352527-19352681) | |
| 37-149, gnl|danRer3|chr24 (18986594-18986744) | |
| 37-149, gnl|dasNov1|scaffold_70108 (9362-9519) | |
| 37-149, gnl|echTel1|scaffold_313039 (13194-13027) | |
| 37-149, gnl|fr1|chrUn (157292846-157292704) | |
| 37-149, gnl|galGal2|chr1 (111698431-111698303) | |
| 37-149, gnl|hg17|chrX (23484389-23484539) | |
| 37-149, gnl|Hg17|chrX (23484513-23484401) | |
| 37-149, gnl|loxAfr1|scaffold_53273 (9494-9651) | |
| 37-149, gnl|mm7|chrX (150096399-150096246) | |
| 37-149, gnl|Mm7|chrX (150096269-150096381) | |
| 37-149, gnl|monDom2|scaffold_48 (8360329-8360185) | |
| 37-149, gnl|oryCun1|scaffold_210938 (18878-19032) | |
| 37-149, gnl|panTro1|chrX (24317933-24318083) | |
| 37-149, gnl|rheMac2|chrX (21507652-21507802) | |
| 37-149, gnl|rn3|chrX (61604422-61604576) | |
| 37-149, gnl|tetNig1|chrUn_random (52936557-52936676) | |
| 563-870, gnl|bosTau2|chrX (37484250-37483945) | |
| 563-870, gnl|canFam2|chrX (19349428-19349677) | |
| 563-870, gnl|dasNov1|scaffold_70108 (7052-7294) | |
| 563-870, gnl|echTel1|scaffold_313039 (15981-15723) | |
| 563-870, gnl|hg17|chrX (23481408-23481666) | |
| 563-870, gnl|Hg17|chrX (23481758-23481445) | |
| 563-870, gnl|loxAfr1|scaffold_111896 (1035-1287) | |
| 563-870, gnl|mm7|chrX (150098790-150098544) | |
| 563-870, gnl|Mm7|chrX (150098450-150098760) | |
| 563-870, gnl|panTro1|chrX (24314949-24315207) | |
| 563-870, gnl|rheMac2|chrX (21505033-21505293) | |
| 563-870, gnl|rn3|chrX (61601763-61602002) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| sto (0.899119) | |
| csk (0.422238) | |
| hlv (0.278513) | |
| che (0.272628) | |
| lyg (0.266205) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| ski (0.146735) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.899119) | |
| csk (0.422238) | |
| hlv (0.278513) | |
| che (0.272628) | |
| lyg (0.266205) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| ski (0.146735) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| jca (0.11396) |