Non-Coding RNA Search

Ss1.1-ruio06_k20.5

Sequence:


               
               TTCCTCTTGTTCATGTTAGTGATCATCTAATCACAGAGTCAAACACTTTCTCCCCTATAT
AGAAAAATAAACTAAGCATGCTTTATAAGAAAATCTGTTTTCTGATAGAAGCCTGAGCCA
CTGAAAATAAGAGAGACAACTAGAAGCAGAGTAGAGTCTCAGACGAAGGTCTATGTTTGC
AAGGCTTTGAAAGTAATCCCTGGGGTTTGGATTATTTTCACAAGGGTTATGACGTTTTAT
TCAAGTTTGTTGCTCCGTTTTGCACCTCTGCAATAAAAGCAAAATGACAACCAGTACATA
AGGGGTTAGCTTGACAAAGTAGACTTCCTTGTGTTAATTTTTAAGTTCTTTTTCTTATTA
TATCTGTCTACAGGCAGATACAGATAGGTGTATGAAAATGTGCTTGCCTGTAAAATTTGC
ATTCATAAATGTGTTGCCGATGGATCACTTGGGCCTGTACACATACCAATTAGCGTGACC
ACTTCCATCTTAAAAACAAATCTAAAAAACAAAATTTATTATATATATATATATATATAA
AGGACTGTGGGTTGTATACAAACTATTGCAAACACTTGTGCAAATCTGTCTTGATATAAA
GGAAAAGCAAAATCTGTATAACATTACTACTTGAATGCCTCTGTGACTGATTTTTTTTTC
ATTTTAAATATAAACTTTTTTGTGAAAAGTATGCTCAATGTTTTTTTTTCCCTTTCCCCA
TTCCCTTGTAAATACATTTCGTTCTATGTGACTTGGTTTGGAAATAGTTAACTGGTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTCTTGTTCATGTTAGTGATCATCTAATCACAGAGTCAAACACTTTCTCCCCTATAT
AGAAAAATAAACTAAGCATGCTTTATAAGAAAATCTGTTTTCTGATAGAAGCCTGAGCCA
CTGAAAATAAGAGAGACAACTAGAAGCAGAGTAGAGTCTCAGACGAAGGTCTATGTTTGC
AAGGCTTTGAAAGTAATCCCTGGGGTTTGGATTATTTTCACAAGGGTTATGACGTTTTAT
TCAAGTTTGTTGCTCCGTTTTGCACCTCTGCAATAAAAGCAAAATGACAACCAGTACATA
AGGGGTTAGCTTGACAAAGTAGACTTCCTTGTGTTAATTTTTAAGTTCTTTTTCTTATTA
TATCTGTCTACAGGCAGATACAGATAGGTGTATGAAAATGTGCTTGCCTGTAAAATTTGC
ATTCATAAATGTGTTGCCGATGGATCACTTGGGCCTGTACACATACCAATTAGCGTGACC
ACTTCCATCTTAAAAACAAATCTAAAAAACAAAATTTATTATATATATATATATATATAA
AGGACTGTGGGTTGTATACAAACTATTGCAAACACTTGTGCAAATCTGTCTTGATATAAA
GGAAAAGCAAAATCTGTATAACATTACTACTTGAATGCCTCTGTGACTGATTTTTTTTTC
ATTTTAAATATAAACTTTTTTGTGAAAAGTATGCTCAATGTTTTTTTTTCCCTTTCCCCA
TTCCCTTGTAAATACATTTCGTTCTATGTGACTTGGTTTGGAAATAGTTAACTGGTACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               232-465, + strand, RNAz p=0.985381

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-465, + strand, RNAz p=0.985381

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-780, gnl|bosTau2|chr1 (30127065-30126274)
               

               
               5-780, gnl|Hg17|chr3 (121024322-121023538)
               

               
               5-780, gnl|Mm7|chr16 (37951463-37952226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-780, gnl|bosTau2|chr1 (30127065-30126274)
               

               
               5-780, gnl|Hg17|chr3 (121024322-121023538)
               

               
               5-780, gnl|Mm7|chr16 (37951463-37952226)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               liv (0.585137)
               

               
               mga (0.32041)
               

               
               ret (0.257467)
               

               
               ldo (0.194005)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               mga (0.32041)
               

               
               ret (0.257467)
               

               
               ldo (0.194005)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	5-780, gnl\|bosTau2\|chr1 (30127065-30126274)
	5-780, gnl\|Hg17\|chr3 (121024322-121023538)
	5-780, gnl\|Mm7\|chr16 (37951463-37952226)

	liv (0.585137)
	mga (0.32041)
	ret (0.257467)
	ldo (0.194005)
	rec (0.17307)
	ski (0.146735)
	lin (0.145603)
	pla (0.133672)
	kid (0.129735)
	ova (0.129132)
	tra (0.123092)