Non-Coding RNA Search

Ss1.1-ruio06_m10.5

Sequence:


               
               GAGGCTACCTGGCAGATTTCCTTCTGACCAAGAGTTTTAGGCTTGTTACGGTGAGGAAAG
TTGCCACAGTTCTAGGAAGTATCCCCTCTTCAATACTCCTTGTGGTTCTGCCCTATGCTG
CCTCCAACTACATCATAGCAGTGTGCCTTCTGACACTCTCCTCTGGACTAAGCCTGTTGT
CACAGCCAGGGATGTACATCAATGCCTTAGACATTGCCCCAAGGCATTCCAGCTTTCTCA
TGGGAGCCTCCAGGGCGTTTGCACAGATCTCTGCTGTCGTGGTACCCACTATCAGTGGAT
TTCTCCTCAATCAGGACCCTGAATTTGGGTGGAGGAATATCTTCTTCTTGTCTTTTGCCA
TTAACGCATTAGGACTTATCTTCTACCTTATATTTGGAGAAGCAGATGTCCAAGACTGGG
CCAAAGAAAGGAAACTCACTCATTTATAAAGTTATCCCACCTTGGATGGAAAGTCATTAA
GCATCTTATTTCATAAATCAGAAGACTTCAGTGATGGAAATACCAACAGATGGAATTTTC
CTTGCTGTGGCTCTTTTCAGATCTGAGATCTTTATTTTACTCAAATTTCTTTTTGAGGAA
AATATATGATGAATGGAAATTCAAATAAAATGGTAGCCAAGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCTACCTGGCAGATTTCCTTCTGACCAAGAGTTTTAGGCTTGTTACGGTGAGGAAAG
TTGCCACAGTTCTAGGAAGTATCCCCTCTTCAATACTCCTTGTGGTTCTGCCCTATGCTG
CCTCCAACTACATCATAGCAGTGTGCCTTCTGACACTCTCCTCTGGACTAAGCCTGTTGT
CACAGCCAGGGATGTACATCAATGCCTTAGACATTGCCCCAAGGCATTCCAGCTTTCTCA
TGGGAGCCTCCAGGGCGTTTGCACAGATCTCTGCTGTCGTGGTACCCACTATCAGTGGAT
TTCTCCTCAATCAGGACCCTGAATTTGGGTGGAGGAATATCTTCTTCTTGTCTTTTGCCA
TTAACGCATTAGGACTTATCTTCTACCTTATATTTGGAGAAGCAGATGTCCAAGACTGGG
CCAAAGAAAGGAAACTCACTCATTTATAAAGTTATCCCACCTTGGATGGAAAGTCATTAA
GCATCTTATTTCATAAATCAGAAGACTTCAGTGATGGAAATACCAACAGATGGAATTTTC
CTTGCTGTGGCTCTTTTCAGATCTGAGATCTTTATTTTACTCAAATTTCTTTTTGAGGAA
AATATATGATGAATGGAAATTCAAATAAAATGGTAGCCAAGAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               535-647, - strand, RNAz p=0.911419

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               535-647, - strand, RNAz p=0.911419

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               450-647, gnl|bosTau2|chr23 (24466002-24466200)
               

               
               450-647, gnl|Hg17|chr6 (25953507-25953303)
               

               
               450-647, gnl|Mm7|chr13 (23224003-23224165)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               450-647, gnl|bosTau2|chr23 (24466002-24466200)
               

               
               450-647, gnl|Hg17|chr6 (25953507-25953303)
               

               
               450-647, gnl|Mm7|chr13 (23224003-23224165)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.259471)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)

	450-647, gnl\|bosTau2\|chr23 (24466002-24466200)
	450-647, gnl\|Hg17\|chr6 (25953507-25953303)
	450-647, gnl\|Mm7\|chr13 (23224003-23224165)