Ss1.1-ruio06_n14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCACTTGAAGAGGCAAGTAATCTACCGGTGAAAGAAGTAATGGACACCTGGACTAATC AGATGGGTTATCCTGTACTTAATGTGGAAGATATGAGGATCATCTCACAGAAACGCTTTC TGTTGGACCCAAACGCTAATTCTTCTGAGCCACATTCAGTTTTTGGCTACACATGGAATA TTCCAGTTAGATGGACTAACGATAATGAATCAACGATTACAATCTACAACAGGTCAGAAA CAGGAGGAATCACTTTGAACTCTTCTAATCCTAATGGAAACGCTTTTCTCAAAATAAACC CAGATCATATTGGGTTTTATCGTGTAAATTACGAAGTATCAACTTGGGAATGGATAGCTA CCAATCTTTCCCTCAACCACAAGGACTTTTCAACTGCTGATCGTGCAAGTCTTATTGATG ATGCTTTTGCCTTGGCAAGAGCTCAACTTCTAAATTATAAGGAGGCTCTGAACTTGACCA AGTATCTCAAAATGGAAGACGAATATTTACCATGGCAGAGAGTCATTTCAGCCGTAACCT ATATCATTAGCATGTTTGAAGATGATAAAGAGCTATACCCTATGATTGAAAAATACTTCA GAGATCAAGTGAAGCCCATCGCAGATTCTCTGGGATGGAATGATAATGGAGACCACCTCA CAAAGTTACTCCGCGCCTCTGTATTAGGGTTCGCATGCAAGATGGGAGACAGCAATGCCT TGAACAACGCTTCCCATTTATTTGAGCAGTGGCTAACGGGGACTGTAAGTCTTCCTGTAA ATCTCAGGCTTCTGGTATATCGGTATGGAATGCAGAACTCTGGCAATGAGACTTCATGGA ACTACACTCTTAAGCAATACCAGGAAACTTCCTTAGCTCAAGAAAAAGAAAAGCTACTGT ACGGATTAGCATCAGTGAAGAATGTTGCTCTTTTGTCAAGGTATTTGGATTTGCTCAAGG ACCCAAACGTTATTAAAAGCCAGGATGTGTTTACAGTCATTCGATATATCTCCTACAACA GCTATGGGAAGACTATGGCCTGGAACTGGATACAGCTCAACTGGGAATATCTGGTCAACA GATACACACTCAATGACAGAAACCTTGGCCGGATTGTCACCATAGCAGAACCATTCAACA CTGAACTACAGCTCTGGCAGATGGAGAGCTTTTTCAAAAGATATCCAGAAGCTGGAGCAG GAGAAAAACCTAGAGAGCAAGTACTGGAAACAGTAAAAAACAATATTGAATGGCTAAAAC AAAACAGAGACACCATAAGAGACTGGTTTTTTAATTGAACGGTTAATGTGTTCAAATATC ATATATTAATTCTGTGAATCTATTGTTTTTCCTGTTAAATATCTGGTGGCCTAATTTACA AGCACTAGGAAGAGAGTCATACATAGACACTGCTTTTTCTAAGTACTGTGTTTATATGTC TTGCAAAGCTTTTAAATTGTTCCTCTTTGTTTATGAAGGAAGGTACTAATAGAGTAGTTA ATGTACTCAGGGATTTCTTCCAAGTGTACTTCCTAGGAGATTCTTTACAAACTGAAGAGA ATTTAATAGCCATTTTAATGTCTTTAAATATCATTCTTTGTATCTTAAACCTGTGAAAAT AGAACAGTTTGGTCTTAGTTTTACATTTTTAGTACCAAAGAAATACCACTTAATCTTCTC TCTTGATTGATTTTTAAAGTTTAAATACCAGTACTTGAGGGACCAATATTACCATCTTAA TCTTTATTTTATTATTCAGAATTACACAAATCTAATGTAATTGTATTCATATATGTTTTA CTTCTTTAAATCCTATCAAAGTAACCCAGGCTTAGATTTTACTCAAGGATTTCATGAATT AGCCAAAGACATGCCTGAGTGTTTGTTGCCTTTGTTCTTATAAAATCAACAAAAGAACTC TCCTCTCCTTAAAATAAACCTGAATGATTACCTTGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCACTTGAAGAGGCAAGTAATCTACCGGTGAAAGAAGTAATGGACACCTGGACTAATC AGATGGGTTATCCTGTACTTAATGTGGAAGATATGAGGATCATCTCACAGAAACGCTTTC TGTTGGACCCAAACGCTAATTCTTCTGAGCCACATTCAGTTTTTGGCTACACATGGAATA TTCCAGTTAGATGGACTAACGATAATGAATCAACGATTACAATCTACAACAGGTCAGAAA CAGGAGGAATCACTTTGAACTCTTCTAATCCTAATGGAAACGCTTTTCTCAAAATAAACC CAGATCATATTGGGTTTTATCGTGTAAATTACGAAGTATCAACTTGGGAATGGATAGCTA CCAATCTTTCCCTCAACCACAAGGACTTTTCAACTGCTGATCGTGCAAGTCTTATTGATG ATGCTTTTGCCTTGGCAAGAGCTCAACTTCTAAATTATAAGGAGGCTCTGAACTTGACCA AGTATCTCAAAATGGAAGACGAATATTTACCATGGCAGAGAGTCATTTCAGCCGTAACCT ATATCATTAGCATGTTTGAAGATGATAAAGAGCTATACCCTATGATTGAAAAATACTTCA GAGATCAAGTGAAGCCCATCGCAGATTCTCTGGGATGGAATGATAATGGAGACCACCTCA CAAAGTTACTCCGCGCCTCTGTATTAGGGTTCGCATGCAAGATGGGAGACAGCAATGCCT TGAACAACGCTTCCCATTTATTTGAGCAGTGGCTAACGGGGACTGTAAGTCTTCCTGTAA ATCTCAGGCTTCTGGTATATCGGTATGGAATGCAGAACTCTGGCAATGAGACTTCATGGA ACTACACTCTTAAGCAATACCAGGAAACTTCCTTAGCTCAAGAAAAAGAAAAGCTACTGT ACGGATTAGCATCAGTGAAGAATGTTGCTCTTTTGTCAAGGTATTTGGATTTGCTCAAGG ACCCAAACGTTATTAAAAGCCAGGATGTGTTTACAGTCATTCGATATATCTCCTACAACA GCTATGGGAAGACTATGGCCTGGAACTGGATACAGCTCAACTGGGAATATCTGGTCAACA GATACACACTCAATGACAGAAACCTTGGCCGGATTGTCACCATAGCAGAACCATTCAACA CTGAACTACAGCTCTGGCAGATGGAGAGCTTTTTCAAAAGATATCCAGAAGCTGGAGCAG GAGAAAAACCTAGAGAGCAAGTACTGGAAACAGTAAAAAACAATATTGAATGGCTAAAAC AAAACAGAGACACCATAAGAGACTGGTTTTTTAATTGAACGGTTAATGTGTTCAAATATC ATATATTAATTCTGTGAATCTATTGTTTTTCCTGTTAAATATCTGGTGGCCTAATTTACA AGCACTAGGAAGAGAGTCATACATAGACACTGCTTTTTCTAAGTACTGTGTTTATATGTC TTGCAAAGCTTTTAAATTGTTCCTCTTTGTTTATGAAGGAAGGTACTAATAGAGTAGTTA ATGTACTCAGGGATTTCTTCCAAGTGTACTTCCTAGGAGATTCTTTACAAACTGAAGAGA ATTTAATAGCCATTTTAATGTCTTTAAATATCATTCTTTGTATCTTAAACCTGTGAAAAT AGAACAGTTTGGTCTTAGTTTTACATTTTTAGTACCAAAGAAATACCACTTAATCTTCTC TCTTGATTGATTTTTAAAGTTTAAATACCAGTACTTGAGGGACCAATATTACCATCTTAA TCTTTATTTTATTATTCAGAATTACACAAATCTAATGTAATTGTATTCATATATGTTTTA CTTCTTTAAATCCTATCAAAGTAACCCAGGCTTAGATTTTACTCAAGGATTTCATGAATT AGCCAAAGACATGCCTGAGTGTTTGTTGCCTTTGTTCTTATAAAATCAACAAAAGAACTC TCCTCTCCTTAAAATAAACCTGAATGATTACCTTGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1582-1701, + strand, RNAz p=0.970754 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1582-1701, + strand, RNAz p=0.970754 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001977, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 13-169, gnl|bosTau2|chr6 (7805777-7805621) | |
| 13-169, gnl|Hg17|chr4 (111798973-111799129) | |
| 13-169, gnl|Mm7|chr3 (129138703-129138547) | |
| 245-384, gnl|bosTau2|chr6 (7786771-7786635) | |
| 245-384, gnl|Hg17|chr4 (111821509-111821648) | |
| 245-384, gnl|Mm7|chr3 (129123905-129123769) | |
| 412-589, gnl|bosTau2|chr6 (7777856-7777679) | |
| 412-589, gnl|Hg17|chr4 (111826890-111827085) | |
| 412-589, gnl|Mm7|chr3 (129121442-129121265) | |
| 768-943, gnl|bosTau2|chr6 (7776151-7775976) | |
| 768-943, gnl|canFam2|chr32 (33547148-33547342) | |
| 768-943, gnl|danRer3|chr13 (22458740-22458544) | |
| 768-943, gnl|dasNov1|scaffold_1140 (103624-103819) | |
| 768-943, gnl|fr1|chrUn (288949508-288949702) | |
| 768-943, gnl|galGal2|chr4 (58344146-58343948) | |
| 768-943, gnl|hg17|chr4 (111828462-111828657) | |
| 768-943, gnl|Hg17|chr4 (111828474-111828649) | |
| 768-943, gnl|loxAfr1|scaffold_51752 (11094-10899) | |
| 768-943, gnl|mm7|chr3 (129120329-129120136) | |
| 768-943, gnl|Mm7|chr3 (129120315-129120140) | |
| 768-943, gnl|monDom2|scaffold_9 (83961302-83961107) | |
| 768-943, gnl|oryCun1|scaffold_74376 (1294-1099) | |
| 768-943, gnl|panTro1|chr3 (128359742-128359937) | |
| 768-943, gnl|rheMac2|chr5 (103466369-103466564) | |
| 768-943, gnl|tetNig1|chrUn_random (35529536-35529729) | |
| 768-943, gnl|xenTro1|scaffold_720 (480225-480029) | |
| 1159-1855, gnl|bosTau2|chr6 (7765080-7764383) | |
| 1159-1855, gnl|Hg17|chr4 (111840164-111840868) | |
| 1159-1855, gnl|Mm7|chr3 (129110144-129109440) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-169, gnl|bosTau2|chr6 (7805777-7805621) | |
| 13-169, gnl|Hg17|chr4 (111798973-111799129) | |
| 13-169, gnl|Mm7|chr3 (129138703-129138547) | |
| 245-384, gnl|bosTau2|chr6 (7786771-7786635) | |
| 245-384, gnl|Hg17|chr4 (111821509-111821648) | |
| 245-384, gnl|Mm7|chr3 (129123905-129123769) | |
| 412-589, gnl|bosTau2|chr6 (7777856-7777679) | |
| 412-589, gnl|Hg17|chr4 (111826890-111827085) | |
| 412-589, gnl|Mm7|chr3 (129121442-129121265) | |
| 768-943, gnl|bosTau2|chr6 (7776151-7775976) | |
| 768-943, gnl|canFam2|chr32 (33547148-33547342) | |
| 768-943, gnl|danRer3|chr13 (22458740-22458544) | |
| 768-943, gnl|dasNov1|scaffold_1140 (103624-103819) | |
| 768-943, gnl|fr1|chrUn (288949508-288949702) | |
| 768-943, gnl|galGal2|chr4 (58344146-58343948) | |
| 768-943, gnl|hg17|chr4 (111828462-111828657) | |
| 768-943, gnl|Hg17|chr4 (111828474-111828649) | |
| 768-943, gnl|loxAfr1|scaffold_51752 (11094-10899) | |
| 768-943, gnl|mm7|chr3 (129120329-129120136) | |
| 768-943, gnl|Mm7|chr3 (129120315-129120140) | |
| 768-943, gnl|monDom2|scaffold_9 (83961302-83961107) | |
| 768-943, gnl|oryCun1|scaffold_74376 (1294-1099) | |
| 768-943, gnl|panTro1|chr3 (128359742-128359937) | |
| 768-943, gnl|rheMac2|chr5 (103466369-103466564) | |
| 768-943, gnl|tetNig1|chrUn_random (35529536-35529729) | |
| 768-943, gnl|xenTro1|scaffold_720 (480225-480029) | |
| 1159-1855, gnl|bosTau2|chr6 (7765080-7764383) | |
| 1159-1855, gnl|Hg17|chr4 (111840164-111840868) | |
| 1159-1855, gnl|Mm7|chr3 (129110144-129109440) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| kid (4.0218) | |
| sin (1.92442) | |
| jej (0.494609) | |
| ill (0.351185) | |
| nje (0.33184) | |
| duo (0.172801) | |
| nco (0.161734) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (4.0218) | |
| sin (1.92442) | |
| jej (0.494609) | |
| ill (0.351185) | |
| nje (0.33184) | |
| duo (0.172801) | |
| nco (0.161734) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| tra (0.123092) | |
| cty (0.10408) |