Non-Coding RNA Search

Ss1.1-ruio07_a4.5

Sequence:


               
               CAAGGTCAAGAGGAAGGGAGGCTTCAGTCTGCGTCGCCATTTCTTTTGCCTTCAGTCTCT
GCACCTTTCGCAGAGCTTGCAACAGCGCAATGTTGGGACAGAGTATTCGGAGGTTCACAA
CCTCTGTGGTCCGTAGGAGCCACTATGAGGAGGGTCCAGGGAAGAATTTGCCATTTTCAG
TGGAAAATAAGTGGCGGTTACTAGCTATGATGACTCTGTACTTTGGATCTGGATTTGCTG
CACCTTTCTTTATAGTAAGACACCAACTGCTTAAAAAATAATCCATGAGACAGATGTGAA
GAGGAGCATTTTAAGAGGTGCAGTCTCTGAAAAAGGATCAAATTCTTGAACTCAGCATAC
TGGATATGTTTGTAAATAAAGTTATGGCATAAATCCTCAATGCTTCTTGGAAATAATGGA
ACATAATAGTTGAGCGTGTGCTTTTTATTTGGGTAATATTCCATTATTAGCTTCTTGATT
AAATATATAAGTGCAAGAGCTTCATTTTCCTCTAGACGTGTACCCTAAATCTGAAGTTTT
TGAATTGATAAATGTGCTACTGACCACATTTATCAATTAGTATTAGTATTACTTAGACTG
AATGAAAGAATTTTTTGAAGTGGAATATACTAGCATGTGAGACAGTATAGGAAATATTCC
CAATTTATTCTGGAGCTTTGACTAGTACTGTGTTGACTAGTAATTACTAGAAATGGGTAA
AAAGTTGGTTCTGGTCAGTAATTGTATTAATAAATAAAGTTTATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGTCAAGAGGAAGGGAGGCTTCAGTCTGCGTCGCCATTTCTTTTGCCTTCAGTCTCT
GCACCTTTCGCAGAGCTTGCAACAGCGCAATGTTGGGACAGAGTATTCGGAGGTTCACAA
CCTCTGTGGTCCGTAGGAGCCACTATGAGGAGGGTCCAGGGAAGAATTTGCCATTTTCAG
TGGAAAATAAGTGGCGGTTACTAGCTATGATGACTCTGTACTTTGGATCTGGATTTGCTG
CACCTTTCTTTATAGTAAGACACCAACTGCTTAAAAAATAATCCATGAGACAGATGTGAA
GAGGAGCATTTTAAGAGGTGCAGTCTCTGAAAAAGGATCAAATTCTTGAACTCAGCATAC
TGGATATGTTTGTAAATAAAGTTATGGCATAAATCCTCAATGCTTCTTGGAAATAATGGA
ACATAATAGTTGAGCGTGTGCTTTTTATTTGGGTAATATTCCATTATTAGCTTCTTGATT
AAATATATAAGTGCAAGAGCTTCATTTTCCTCTAGACGTGTACCCTAAATCTGAAGTTTT
TGAATTGATAAATGTGCTACTGACCACATTTATCAATTAGTATTAGTATTACTTAGACTG
AATGAAAGAATTTTTTGAAGTGGAATATACTAGCATGTGAGACAGTATAGGAAATATTCC
CAATTTATTCTGGAGCTTTGACTAGTACTGTGTTGACTAGTAATTACTAGAAATGGGTAA
AAAGTTGGTTCTGGTCAGTAATTGTATTAATAAATAAAGTTTATTTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|33150764|gb|AAP97260.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33150764|gb|AAP97260.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-158, + strand, RNAz p=0.832919

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, + strand, RNAz p=0.832919

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-393, gnl|bosTau2|chr10 (48770491-48770883)
               

               
               1-393, gnl|Hg17|chr1 (199468293-199467889)
               

               
               1-393, gnl|Mm7|chr11 (75681616-75681220)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-393, gnl|bosTau2|chr10 (48770491-48770883)
               

               
               1-393, gnl|Hg17|chr1 (199468293-199467889)
               

               
               1-393, gnl|Mm7|chr11 (75681616-75681220)

Expressed library(ies): 80 entry(ies)

More info

Expressed library(ies): 80 entry(ies)

Help | Less info


               
               sto (3.95612)
               

               
               che (3.81679)
               

               
               nms (2.5663)
               

               
               bfe (2.54758)
               

               
               cmu (2.23672)
               

               
               cbe (2.15311)
               

               
               hlv (1.94959)
               

               
               cte (1.75644)
               

               
               cut (1.69924)
               

               
               sag (1.64444)
               

               
               csk (1.40746)
               

               
               cst (1.40036)
               

               
               duo (1.38241)
               

               
               mas (1.26183)
               

               
               jej (1.18706)
               

               
               cki (1.15664)
               

               
               elu (1.15607)
               

               
               pty (1.14172)
               

               
               ton (1.053)
               

               
               fbs (1.05208)
               

               
               hyp (0.999857)
               

               
               vin (0.997672)
               

               
               nje (0.99552)
               

               
               eje (0.988338)
               

               
               kid (0.908147)
               

               
               fty (0.879198)
               

               
               ssp (0.813118)
               

               
               fcc (0.791139)
               

               
               aor (0.781097)
               

               
               ill (0.702371)
               

               
               nmm (0.664011)
               

               
               nco (0.646935)
               

               
               ese (0.632511)
               

               
               isp (0.601504)
               

               
               eru (0.60024)
               

               
               ecc (0.575175)
               

               
               nca (0.547495)
               

               
               fce (0.543183)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               mcp (0.511945)
               

               
               eye (0.511509)
               

               
               cly (0.482567)
               

               
               jca (0.45584)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               ret (0.3862)
               

               
               nlu (0.383362)
               

               
               sug (0.381874)
               

               
               nep (0.36785)
               

               
               pgl (0.35545)
               

               
               med (0.348756)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               cje (0.330469)
               

               
               mga (0.32041)
               

               
               nbm (0.297974)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 80 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (3.95612)
               

               
               che (3.81679)
               

               
               nms (2.5663)
               

               
               bfe (2.54758)
               

               
               cmu (2.23672)
               

               
               cbe (2.15311)
               

               
               hlv (1.94959)
               

               
               cte (1.75644)
               

               
               cut (1.69924)
               

               
               sag (1.64444)
               

               
               csk (1.40746)
               

               
               cst (1.40036)
               

               
               duo (1.38241)
               

               
               mas (1.26183)
               

               
               jej (1.18706)
               

               
               cki (1.15664)
               

               
               elu (1.15607)
               

               
               pty (1.14172)
               

               
               ton (1.053)
               

               
               fbs (1.05208)
               

               
               hyp (0.999857)
               

               
               vin (0.997672)
               

               
               nje (0.99552)
               

               
               eje (0.988338)
               

               
               kid (0.908147)
               

               
               fty (0.879198)
               

               
               ssp (0.813118)
               

               
               fcc (0.791139)
               

               
               aor (0.781097)
               

               
               ill (0.702371)
               

               
               nmm (0.664011)
               

               
               nco (0.646935)
               

               
               ese (0.632511)
               

               
               isp (0.601504)
               

               
               eru (0.60024)
               

               
               ecc (0.575175)
               

               
               nca (0.547495)
               

               
               fce (0.543183)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               mcp (0.511945)
               

               
               eye (0.511509)
               

               
               cly (0.482567)
               

               
               jca (0.45584)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               ret (0.3862)
               

               
               nlu (0.383362)
               

               
               sug (0.381874)
               

               
               nep (0.36785)
               

               
               pgl (0.35545)
               

               
               med (0.348756)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               cje (0.330469)
               

               
               mga (0.32041)
               

               
               nbm (0.297974)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	1-393, gnl\|bosTau2\|chr10 (48770491-48770883)
	1-393, gnl\|Hg17\|chr1 (199468293-199467889)
	1-393, gnl\|Mm7\|chr11 (75681616-75681220)

	sto (3.95612)
	che (3.81679)
	nms (2.5663)
	bfe (2.54758)
	cmu (2.23672)
	cbe (2.15311)
	hlv (1.94959)
	cte (1.75644)
	cut (1.69924)
	sag (1.64444)
	csk (1.40746)
	cst (1.40036)
	duo (1.38241)
	mas (1.26183)
	jej (1.18706)
	cki (1.15664)
	elu (1.15607)
	pty (1.14172)
	ton (1.053)
	fbs (1.05208)
	hyp (0.999857)
	vin (0.997672)
	nje (0.99552)
	eje (0.988338)
	kid (0.908147)
	fty (0.879198)
	ssp (0.813118)
	fcc (0.791139)
	aor (0.781097)
	ill (0.702371)
	nmm (0.664011)
	nco (0.646935)
	ese (0.632511)
	isp (0.601504)
	eru (0.60024)
	ecc (0.575175)
	nca (0.547495)
	fce (0.543183)
	rec (0.519211)
	pro (0.512033)
	mcp (0.511945)
	eye (0.511509)
	cly (0.482567)
	jca (0.45584)
	cag (0.453583)
	amn (0.417711)
	hea (0.408998)
	ret (0.3862)
	nlu (0.383362)
	sug (0.381874)
	nep (0.36785)
	pgl (0.35545)
	med (0.348756)
	spc (0.340097)
	fhi (0.339155)
	cje (0.330469)
	mga (0.32041)
	nbm (0.297974)
	spl (0.286369)
	lnt (0.284616)
	cga (0.279096)
	ste (0.270416)
	lyg (0.266205)
	bla (0.248694)
	eep (0.245128)
	mgp (0.230681)
	ece (0.229305)
	col (0.195008)
	mgm (0.180343)
	gul (0.177588)
	sin (0.174948)
	fco (0.157208)
	cli (0.152812)
	eli (0.151814)
	lin (0.145603)
	ute (0.132784)
	ova (0.129132)
	tra (0.123092)
	ebs (0.118301)
	ldo (0.0970026)