Ss1.1-ruio07_a5.5
|
AATTGTCGCAAGTTTTGGTTTCTCACTCTAGACCCGGTGTCTAGAGCACCATGGCAACTG
GACAGAGGCTGATGAGAGCTATTAGAGTTTTTAAATTTGGTGGACCAGAAGTGATGAAAC
TCCAGTCGGATGTTGCCATACCAATTCCAAAGGACAATCAGGTTCTAATCAAAGTCCACG
CATGTGGTGTCAACCCAGTGGACACGTATATTCGCTCTGGTACTCACAATATGAAACCAC
TTCTACCCTATACTCCTGGTTTAGATGTGGCTGGAATAGTAGAAGCTGTCGGAGAGCATG
TATCTTCTTTCAAGAAAGGTGACAGAGTTTTCACAGTCAGCACTCTCTCCGGGGGCTACG
CAGAGTATGCTTTAGCAGCCGACGACACTGTTTACATGCTGCCAGAAAAACTGGACTTTA
AACAAGGAGCTGCCATTGGGATCCCATATTTTACTGCTTGTCTTGCTCTGCTCCACAGTG
CCTGTGTGAAAGCTGGAGAAATTGTTCTGATTCATGGGGCTAGTGGAGGGGTTGGAATAG
CAGCGTGCCAAATTGCTAGAGCTTATGGCTTAAAGGTTTTGGGCACAGCTGGTACTGAGG
AAGGACAAAACATTGTTTTGCAAAATGGAGCCCATGAAGTGTTTAATCACAGAGAAGTTA
ATTATATTGACAAAATTAAGAAATCTGTTGGTGAAAAAGGAATTGATGTGATTATTGAAA
TGTTAGCTAATGTAAATCTTAGCAATGATTTGAATCTTTTGTCACATGGAGGACGAGTAA
TAATTGTTGGCTCCAGAGGTCCTATTGAAATAAACCCTCGGGACACTATGACAAAGGGAT
CTAGCATAAAAGGAGTTGCTCTCTATTCATCAACCAAGGAGGAATTTCAGCAGTTGGCAG
CAGCCCTTCAAGCTGGAATGGAAGTTGGTTGGTTGAGACCTGTGATAGGTCCTGTGTATC
CACTGGAGAAGGCGGCCCAGGCTCATGAAGACATCATTCACAGCCGTGGGGCTACTGGGA
AAATGATCCTTCTCTTAAAATGATTACTCCTTCCTTAGATTTCCTATGCAATGAGATGCT
TTAATTAGCATCCATTCGTTTCAGTGATCTTGTTATATTTGAAAACAAAGTTTTATCCTT
GGAGATCACAGGCATTGGAGTATGGTTTACTTTGTGTCTGGCTATATTCTTTATGCCTGC
CACCTCATCAAGGAGTCATCCCAATAGGAATTAGAATGTTGGTAGTCTCTTGGCATTGGT
GCGCATTACAGAAATTCCTAACTGATGCTTGCTCATTAATTCCCTACTTTTGACGAAGAC
GTGCTAATTCAAAATAACACTACTTGATTTCCAAGCCTACTTCTCCTTATAAAGCTTCTT
TAGTCTGATTAGTCCAGAACTATATTGGACTCTGAAAGTTTTCTGGACTGAAGTAGACCC
CTTTTCACCAAAACTGATCTCATCTAGATCTACACATCTCTCAGAGGGCAAGATAACATC
CAAAGAAATTTATTCGTTTTCCAGTATTTCCCAAAATATTAGAATATTCAGTAGGTTAAT
GATTGATTACCAGCGGTCCATATATTCTGTGAGGACAGCAGCTTTATCTTTGGTATAATA
TAGTAGGCACATAGTTTACAAATAGGTACTTTTTGATGGATTCAACTTCAAAGTGGATTT
AGAATTTTCAGTTTATATGATGAGTGTATATTTTTATTAAATTAATAAATGAATTAACAC
ATTAAAAAAAAAAAAAAAAAAAAATTATAATGTGGTAACTGCAATAAATTCCATAGGAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATTGTCGCAAGTTTTGGTTTCTCACTCTAGACCCGGTGTCTAGAGCACCATGGCAACTG
GACAGAGGCTGATGAGAGCTATTAGAGTTTTTAAATTTGGTGGACCAGAAGTGATGAAAC
TCCAGTCGGATGTTGCCATACCAATTCCAAAGGACAATCAGGTTCTAATCAAAGTCCACG
CATGTGGTGTCAACCCAGTGGACACGTATATTCGCTCTGGTACTCACAATATGAAACCAC
TTCTACCCTATACTCCTGGTTTAGATGTGGCTGGAATAGTAGAAGCTGTCGGAGAGCATG
TATCTTCTTTCAAGAAAGGTGACAGAGTTTTCACAGTCAGCACTCTCTCCGGGGGCTACG
CAGAGTATGCTTTAGCAGCCGACGACACTGTTTACATGCTGCCAGAAAAACTGGACTTTA
AACAAGGAGCTGCCATTGGGATCCCATATTTTACTGCTTGTCTTGCTCTGCTCCACAGTG
CCTGTGTGAAAGCTGGAGAAATTGTTCTGATTCATGGGGCTAGTGGAGGGGTTGGAATAG
CAGCGTGCCAAATTGCTAGAGCTTATGGCTTAAAGGTTTTGGGCACAGCTGGTACTGAGG
AAGGACAAAACATTGTTTTGCAAAATGGAGCCCATGAAGTGTTTAATCACAGAGAAGTTA
ATTATATTGACAAAATTAAGAAATCTGTTGGTGAAAAAGGAATTGATGTGATTATTGAAA
TGTTAGCTAATGTAAATCTTAGCAATGATTTGAATCTTTTGTCACATGGAGGACGAGTAA
TAATTGTTGGCTCCAGAGGTCCTATTGAAATAAACCCTCGGGACACTATGACAAAGGGAT
CTAGCATAAAAGGAGTTGCTCTCTATTCATCAACCAAGGAGGAATTTCAGCAGTTGGCAG
CAGCCCTTCAAGCTGGAATGGAAGTTGGTTGGTTGAGACCTGTGATAGGTCCTGTGTATC
CACTGGAGAAGGCGGCCCAGGCTCATGAAGACATCATTCACAGCCGTGGGGCTACTGGGA
AAATGATCCTTCTCTTAAAATGATTACTCCTTCCTTAGATTTCCTATGCAATGAGATGCT
TTAATTAGCATCCATTCGTTTCAGTGATCTTGTTATATTTGAAAACAAAGTTTTATCCTT
GGAGATCACAGGCATTGGAGTATGGTTTACTTTGTGTCTGGCTATATTCTTTATGCCTGC
CACCTCATCAAGGAGTCATCCCAATAGGAATTAGAATGTTGGTAGTCTCTTGGCATTGGT
GCGCATTACAGAAATTCCTAACTGATGCTTGCTCATTAATTCCCTACTTTTGACGAAGAC
GTGCTAATTCAAAATAACACTACTTGATTTCCAAGCCTACTTCTCCTTATAAAGCTTCTT
TAGTCTGATTAGTCCAGAACTATATTGGACTCTGAAAGTTTTCTGGACTGAAGTAGACCC
CTTTTCACCAAAACTGATCTCATCTAGATCTACACATCTCTCAGAGGGCAAGATAACATC
CAAAGAAATTTATTCGTTTTCCAGTATTTCCCAAAATATTAGAATATTCAGTAGGTTAAT
GATTGATTACCAGCGGTCCATATATTCTGTGAGGACAGCAGCTTTATCTTTGGTATAATA
TAGTAGGCACATAGTTTACAAATAGGTACTTTTTGATGGATTCAACTTCAAAGTGGATTT
AGAATTTTCAGTTTATATGATGAGTGTATATTTTTATTAAATTAATAAATGAATTAACAC
ATTAAAAAAAAAAAAAAAAAAAAATTATAATGTGGTAACTGCAATAAATTCCATAGGAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
37-171, gnl|bosTau2|chr3 (49822360-49822494) |
|
37-171, gnl|canFam2|chr6 (74718748-74718492) |
|
37-171, gnl|danRer3|chrUn (122053052-122052826) |
|
37-171, gnl|dasNov1|scaffold_164522 (3642-3919) |
|
37-171, gnl|echTel1|scaffold_296883 (98052-97781) |
|
37-171, gnl|hg17|chr1 (74902283-74902555) |
|
37-171, gnl|Hg17|chr1 (74902540-74902406) |
|
37-171, gnl|loxAfr1|scaffold_32070 (6678-6950) |
|
37-171, gnl|mm7|chr3 (154513573-154513356) |
|
37-171, gnl|Mm7|chr3 (154513362-154513490) |
|
37-171, gnl|oryCun1|scaffold_187353 (12681-12409) |
|
37-171, gnl|panTro1|chr1 (73472252-73472524) |
|
37-171, gnl|rheMac2|chr1 (77542840-77543111) |
|
37-171, gnl|rn3|chr2 (252455073-252454856) |
|
37-171, gnl|xenTro1|scaffold_514 (796375-796074) |
| |
|
313-757, gnl|bosTau2|chr26 (3785516-3785959) |
|
313-757, gnl|Hg17|chr7 (102323757-102323309) |
|
313-757, gnl|Mm7|chr14 (112777782-112777301) |
| |
|
775-1076, gnl|bosTau2|chr26 (3785942-3786226) |
|
775-1076, gnl|Hg17|chr7 (102323361-102323039) |
|
775-1076, gnl|Mm7|chr14 (112777353-112777064) |
| |
|
1077-1656, gnl|bosTau2|chr26 (3786761-3787346) |
|
1077-1656, gnl|Hg17|chr7 (102323000-102322398) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
37-171, gnl|bosTau2|chr3 (49822360-49822494) |
|
37-171, gnl|canFam2|chr6 (74718748-74718492) |
|
37-171, gnl|danRer3|chrUn (122053052-122052826) |
|
37-171, gnl|dasNov1|scaffold_164522 (3642-3919) |
|
37-171, gnl|echTel1|scaffold_296883 (98052-97781) |
|
37-171, gnl|hg17|chr1 (74902283-74902555) |
|
37-171, gnl|Hg17|chr1 (74902540-74902406) |
|
37-171, gnl|loxAfr1|scaffold_32070 (6678-6950) |
|
37-171, gnl|mm7|chr3 (154513573-154513356) |
|
37-171, gnl|Mm7|chr3 (154513362-154513490) |
|
37-171, gnl|oryCun1|scaffold_187353 (12681-12409) |
|
37-171, gnl|panTro1|chr1 (73472252-73472524) |
|
37-171, gnl|rheMac2|chr1 (77542840-77543111) |
|
37-171, gnl|rn3|chr2 (252455073-252454856) |
|
37-171, gnl|xenTro1|scaffold_514 (796375-796074) |
| |
|
313-757, gnl|bosTau2|chr26 (3785516-3785959) |
|
313-757, gnl|Hg17|chr7 (102323757-102323309) |
|
313-757, gnl|Mm7|chr14 (112777782-112777301) |
| |
|
775-1076, gnl|bosTau2|chr26 (3785942-3786226) |
|
775-1076, gnl|Hg17|chr7 (102323361-102323039) |
|
775-1076, gnl|Mm7|chr14 (112777353-112777064) |
| |
|
1077-1656, gnl|bosTau2|chr26 (3786761-3787346) |
|
1077-1656, gnl|Hg17|chr7 (102323000-102322398) |
|
kid (2.85418) |
|
lun (1.3544) |
|
liv (1.02399) |
|
isp (0.601504) |
|
rec (0.519211) |
|
pan (0.471921) |
|
fli (0.405762) |
|
cki (0.330469) |
|
sme (0.305437) |
|
jej (0.296765) |
|
eje (0.296501) |
|
spl (0.286369) |
|
ova (0.258264) |
|
clu (0.239292) |
|
mgp (0.230681) |
|
hea (0.204499) |
|
aor (0.195274) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
cli (0.152812) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
kid (2.85418) |
|
lun (1.3544) |
|
liv (1.02399) |
|
isp (0.601504) |
|
rec (0.519211) |
|
pan (0.471921) |
|
fli (0.405762) |
|
cki (0.330469) |
|
sme (0.305437) |
|
jej (0.296765) |
|
eje (0.296501) |
|
spl (0.286369) |
|
ova (0.258264) |
|
clu (0.239292) |
|
mgp (0.230681) |
|
hea (0.204499) |
|
aor (0.195274) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
cli (0.152812) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
ldo (0.0970026) |
