Non-Coding RNA Search

Ss1.1-ruio07_c13.5

Sequence:


               
               GGTTCAGCTGTATTAAGATTAAGTGCATTTGGCCAATAGGTAGTATCTATACCGAATTTC
CGCCACTTTTCTTCTCTGAAAGGACTCCAGTCTTCCACTGCAGATAATTGGAGACGTCAC
CCAAGTTTTCTTTCCCTTTAGTTTGTTCGTTTGCTGTCTGGATGGCCGATGAGCCGGTCT
CCTTTTCCGTGGCCAGTCTCAAGGCCCCCTTTGGAAGCGCTGTTTACAGTAAAATCCTTG
CCGAGATCCCATACTGTCCTCTGGAATGACCAGTCTGAGCGGTTACCGAGCTGGGCGGGG
AAGGTCCCGCTGGTTCTTCCACGAACCACCGACTCATGAAACGATGTGGTCCAGGAGCGG
GGCGACTTCCTTAGTGGGTGAACATGACACGTGATCACCTGTGCATTCGGTTCTGTGAAT
ACTGCCCTTGTGGCCTTGGGATGGGTGGGGGGGCGGTTTCTTCCTCCTCAGCCTTCCTTG
CTCCCTGTGAACCCAGACTAGTGTCAGCTCGAAGGGTGCCGTAGCGCCCTGCCAGTATGC
GTGGTGGCCTTCGGTGAAGAGAGGAGTCCTCATTTCTAGCCACTGGGGTCCTGGTCCCAG
AGCCATCTCTGAGATGCTCATCGTTGTGTTTTTTTAGCATGAGGTCCCCGCCGCTCCACA
CTTCCAAGTGTATGCCTCCCACCGGCCAAGGGAAACGAGACACACAGAGCTTTGTGGGCA
CGATCAGACTGACATGGCCAGTACAGAGGAGAACTAGGGAAGGAATGATGTTTTGCACCT
TATTGAAAAGAAAATTTTAAGTGCGTACATAGTTAAGAGCTTTTATTGTGACAGGAGAAC
CTTTTTTCCATATGCGTGCATACTCTCTGTAATTCCAGTGTAAAATATTGTACTTGCACT
AGCTTTTTTAAAACAAATATTAAAAAAATGGAAGAATTCATATTCTATTTTCTAATCGTG
GTGTGTCTATTTGTAGGATACACTCGAGTCTGTTTATTGAATTTTATGGTCCCTTTCTTT
GATGGTGCTTGCAGGTTTTCTAGGTAGAAATTATTTCATTATTATAATAAAACAATGTTT
GATTCAAAATTTGAACAAAATTGTTTTAAATAAATTGTCTGTATACCAGTACAAGTTTAT
TGTTTCAGTATACTCGTACTAATAAAATAACAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCAGCTGTATTAAGATTAAGTGCATTTGGCCAATAGGTAGTATCTATACCGAATTTC
CGCCACTTTTCTTCTCTGAAAGGACTCCAGTCTTCCACTGCAGATAATTGGAGACGTCAC
CCAAGTTTTCTTTCCCTTTAGTTTGTTCGTTTGCTGTCTGGATGGCCGATGAGCCGGTCT
CCTTTTCCGTGGCCAGTCTCAAGGCCCCCTTTGGAAGCGCTGTTTACAGTAAAATCCTTG
CCGAGATCCCATACTGTCCTCTGGAATGACCAGTCTGAGCGGTTACCGAGCTGGGCGGGG
AAGGTCCCGCTGGTTCTTCCACGAACCACCGACTCATGAAACGATGTGGTCCAGGAGCGG
GGCGACTTCCTTAGTGGGTGAACATGACACGTGATCACCTGTGCATTCGGTTCTGTGAAT
ACTGCCCTTGTGGCCTTGGGATGGGTGGGGGGGCGGTTTCTTCCTCCTCAGCCTTCCTTG
CTCCCTGTGAACCCAGACTAGTGTCAGCTCGAAGGGTGCCGTAGCGCCCTGCCAGTATGC
GTGGTGGCCTTCGGTGAAGAGAGGAGTCCTCATTTCTAGCCACTGGGGTCCTGGTCCCAG
AGCCATCTCTGAGATGCTCATCGTTGTGTTTTTTTAGCATGAGGTCCCCGCCGCTCCACA
CTTCCAAGTGTATGCCTCCCACCGGCCAAGGGAAACGAGACACACAGAGCTTTGTGGGCA
CGATCAGACTGACATGGCCAGTACAGAGGAGAACTAGGGAAGGAATGATGTTTTGCACCT
TATTGAAAAGAAAATTTTAAGTGCGTACATAGTTAAGAGCTTTTATTGTGACAGGAGAAC
CTTTTTTCCATATGCGTGCATACTCTCTGTAATTCCAGTGTAAAATATTGTACTTGCACT
AGCTTTTTTAAAACAAATATTAAAAAAATGGAAGAATTCATATTCTATTTTCTAATCGTG
GTGTGTCTATTTGTAGGATACACTCGAGTCTGTTTATTGAATTTTATGGTCCCTTTCTTT
GATGGTGCTTGCAGGTTTTCTAGGTAGAAATTATTTCATTATTATAATAAAACAATGTTT
GATTCAAAATTTGAACAAAATTGTTTTAAATAAATTGTCTGTATACCAGTACAAGTTTAT
TGTTTCAGTATACTCGTACTAATAAAATAACAGTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               570-688, - strand, RNAz p=0.97953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               570-688, - strand, RNAz p=0.97953

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1176, gnl|bosTau2|chr23 (35919763-35920951)
               

               
               1-1176, gnl|Hg17|chr6 (16408524-16407330)
               

               
               1-1176, gnl|Mm7|chr13 (45001388-45000239)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1176, gnl|bosTau2|chr23 (35919763-35920951)
               

               
               1-1176, gnl|Hg17|chr6 (16408524-16407330)
               

               
               1-1176, gnl|Mm7|chr13 (45001388-45000239)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               isp (0.451128)
               

               
               bfe (0.449573)
               

               
               cmu (0.372787)
               

               
               gul (0.355177)
               

               
               duo (0.345602)
               

               
               cbl (0.344392)
               

               
               lyg (0.266205)
               

               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.451128)
               

               
               bfe (0.449573)
               

               
               cmu (0.372787)
               

               
               gul (0.355177)
               

               
               duo (0.345602)
               

               
               cbl (0.344392)
               

               
               lyg (0.266205)
               

               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

	1-1176, gnl\|bosTau2\|chr23 (35919763-35920951)
	1-1176, gnl\|Hg17\|chr6 (16408524-16407330)
	1-1176, gnl\|Mm7\|chr13 (45001388-45000239)

	isp (0.451128)
	bfe (0.449573)
	cmu (0.372787)
	gul (0.355177)
	duo (0.345602)
	cbl (0.344392)
	lyg (0.266205)
	ece (0.229305)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	cut (0.169924)
	csp (0.161186)
	mga (0.160205)
	fco (0.157208)
	ski (0.146735)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)
	cly (0.120642)