Non-Coding RNA Search

Ss1.1-ruio07_f12.5

Sequence:


               
               GAAAAGCCTGACTGATTTGAATAGTTCCACTAATTAAATTTCAAAACTCAAAGGAACTTT
GAGATAGATTGACTCCTGATGGTATCCATGTAAACTAGCTCCTGTAAACTGGAAAAGACC
CCCCTACACACACACCTCAAAAGCAGTGGAGGAAATGCGAGTATTTGCATGGTTGTGGTG
TGCCGCTACTTAAATTATGTAGTGACACACTGAAATTTTTATTGTTCAATAACCTGAAGA
AGTTTCCCGTTACTTATGTTTACTAAGGTAACTATAAATTGGTGAAATCTGCAAAGAGGA
AGCTTTTAAACTCTACAGTAGTTAGCAGCCTTTGTGTAGCTGGATGACATTCCCATGATA
TGAAATATTTGAATTTTAAAATGTACCATTATTTTAAGAAAGAAGACCTGGCATTATTCT
GTATTCTTAAATGATGATGTCCATATCAGTTTAAGAAAGGAAAAACAAAATGAATAATTG
TCATTGCATTAGCTGTATGTTGAATTGGGAAATTGTGGCATAAAGGTTAAATTTGTGTTT
ATCAAATGTGAACCATAGTAGTTTAATGCTGCTCTGTATATACTGTAAGTGCTACAGATA
GTCTCAGCACTGAAAATGTATTGATACCTCTCAAATGAATGCGTTTGATGTAGGTGTTTT
GATATGCCTCAGAAAGTATCTGAGTGTCTAAGAACTTGTTAATTTGTTTGGTAATGAAGA
TACTTCCTGTCTTTTGTTGCATATTTTCATGTTTAAAATTTAATTTTTACATTTTCACTA
CTGTTAATTTAAATAAAATTTGTTCTGTGGTTAAAATGGGGTTGCCAGTGAAAAAAATTA
ATAACCTCGTTTCAAGTAACTGCTTAAAAAATACATTTTTGCTATATGTTCATAAACTTT
TAATGAATCTGTATTTCTGTTTAAATGTAAGTGATGTTTAGGCTTTATTTCTGTTTAATA
AGGCCTTTTACCATTGATTAAATGAAGGAATGTATCTTTTTGAAGAGATTTATATTCTGT
AAATAAAAATTGGTTGTAACAATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAGCCTGACTGATTTGAATAGTTCCACTAATTAAATTTCAAAACTCAAAGGAACTTT
GAGATAGATTGACTCCTGATGGTATCCATGTAAACTAGCTCCTGTAAACTGGAAAAGACC
CCCCTACACACACACCTCAAAAGCAGTGGAGGAAATGCGAGTATTTGCATGGTTGTGGTG
TGCCGCTACTTAAATTATGTAGTGACACACTGAAATTTTTATTGTTCAATAACCTGAAGA
AGTTTCCCGTTACTTATGTTTACTAAGGTAACTATAAATTGGTGAAATCTGCAAAGAGGA
AGCTTTTAAACTCTACAGTAGTTAGCAGCCTTTGTGTAGCTGGATGACATTCCCATGATA
TGAAATATTTGAATTTTAAAATGTACCATTATTTTAAGAAAGAAGACCTGGCATTATTCT
GTATTCTTAAATGATGATGTCCATATCAGTTTAAGAAAGGAAAAACAAAATGAATAATTG
TCATTGCATTAGCTGTATGTTGAATTGGGAAATTGTGGCATAAAGGTTAAATTTGTGTTT
ATCAAATGTGAACCATAGTAGTTTAATGCTGCTCTGTATATACTGTAAGTGCTACAGATA
GTCTCAGCACTGAAAATGTATTGATACCTCTCAAATGAATGCGTTTGATGTAGGTGTTTT
GATATGCCTCAGAAAGTATCTGAGTGTCTAAGAACTTGTTAATTTGTTTGGTAATGAAGA
TACTTCCTGTCTTTTGTTGCATATTTTCATGTTTAAAATTTAATTTTTACATTTTCACTA
CTGTTAATTTAAATAAAATTTGTTCTGTGGTTAAAATGGGGTTGCCAGTGAAAAAAATTA
ATAACCTCGTTTCAAGTAACTGCTTAAAAAATACATTTTTGCTATATGTTCATAAACTTT
TAATGAATCTGTATTTCTGTTTAAATGTAAGTGATGTTTAGGCTTTATTTCTGTTTAATA
AGGCCTTTTACCATTGATTAAATGAAGGAATGTATCTTTTTGAAGAGATTTATATTCTGT
AAATAAAAATTGGTTGTAACAATAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               147-261, + strand, RNAz p=0.746813
               

               
               886-1046, - strand, RNAz p=0.848922

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-261, + strand, RNAz p=0.746813
               

               
               886-1046, - strand, RNAz p=0.848922

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-452, gnl|bosTau2|chr5 (50132374-50131923)
               

               
               1-452, gnl|Hg17|chr12 (22733794-22734503)
               


               
               651-1046, gnl|bosTau2|chr5 (50131981-50131580)
               

               
               651-1046, gnl|canFam2|chr27 (27579421-27579145)
               

               
               651-1046, gnl|dasNov1|scaffold_28980 (3869-3593)
               

               
               651-1046, gnl|echTel1|scaffold_84708 (1513-1216)
               

               
               651-1046, gnl|galGal2|chr1 (63053481-63053200)
               

               
               651-1046, gnl|hg17|chr12 (22734498-22734771)
               

               
               651-1046, gnl|Hg17|chr12 (22734497-22734849)
               

               
               651-1046, gnl|loxAfr1|scaffold_90144 (1661-1391)
               

               
               651-1046, gnl|mm7|chr6 (143299008-143299269)
               

               
               651-1046, gnl|Mm7|chr6 (143299007-143299347)
               

               
               651-1046, gnl|monDom2|scaffold_31 (3394563-3394320)
               

               
               651-1046, gnl|oryCun1|scaffold_109441 (8135-7856)
               

               
               651-1046, gnl|panTro1|chrUn_random (49113833-49114106)
               

               
               651-1046, gnl|rheMac2|chr11 (22995729-22996000)
               

               
               651-1046, gnl|rn3|chr4 (181349510-181349773)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-452, gnl|bosTau2|chr5 (50132374-50131923)
               

               
               1-452, gnl|Hg17|chr12 (22733794-22734503)
               


               
               651-1046, gnl|bosTau2|chr5 (50131981-50131580)
               

               
               651-1046, gnl|canFam2|chr27 (27579421-27579145)
               

               
               651-1046, gnl|dasNov1|scaffold_28980 (3869-3593)
               

               
               651-1046, gnl|echTel1|scaffold_84708 (1513-1216)
               

               
               651-1046, gnl|galGal2|chr1 (63053481-63053200)
               

               
               651-1046, gnl|hg17|chr12 (22734498-22734771)
               

               
               651-1046, gnl|Hg17|chr12 (22734497-22734849)
               

               
               651-1046, gnl|loxAfr1|scaffold_90144 (1661-1391)
               

               
               651-1046, gnl|mm7|chr6 (143299008-143299269)
               

               
               651-1046, gnl|Mm7|chr6 (143299007-143299347)
               

               
               651-1046, gnl|monDom2|scaffold_31 (3394563-3394320)
               

               
               651-1046, gnl|oryCun1|scaffold_109441 (8135-7856)
               

               
               651-1046, gnl|panTro1|chrUn_random (49113833-49114106)
               

               
               651-1046, gnl|rheMac2|chr11 (22995729-22996000)
               

               
               651-1046, gnl|rn3|chr4 (181349510-181349773)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               kid (0.648677)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.648677)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               liv (0.146284)
               

               
               spl (0.143184)

	147-261, + strand, RNAz p=0.746813
	886-1046, - strand, RNAz p=0.848922

	1-452, gnl\|bosTau2\|chr5 (50132374-50131923)
	1-452, gnl\|Hg17\|chr12 (22733794-22734503)

	651-1046, gnl\|bosTau2\|chr5 (50131981-50131580)
	651-1046, gnl\|canFam2\|chr27 (27579421-27579145)
	651-1046, gnl\|dasNov1\|scaffold_28980 (3869-3593)
	651-1046, gnl\|echTel1\|scaffold_84708 (1513-1216)
	651-1046, gnl\|galGal2\|chr1 (63053481-63053200)
	651-1046, gnl\|hg17\|chr12 (22734498-22734771)
	651-1046, gnl\|Hg17\|chr12 (22734497-22734849)
	651-1046, gnl\|loxAfr1\|scaffold_90144 (1661-1391)
	651-1046, gnl\|mm7\|chr6 (143299008-143299269)
	651-1046, gnl\|Mm7\|chr6 (143299007-143299347)
	651-1046, gnl\|monDom2\|scaffold_31 (3394563-3394320)
	651-1046, gnl\|oryCun1\|scaffold_109441 (8135-7856)
	651-1046, gnl\|panTro1\|chrUn_random (49113833-49114106)
	651-1046, gnl\|rheMac2\|chr11 (22995729-22996000)
	651-1046, gnl\|rn3\|chr4 (181349510-181349773)

	kid (0.648677)
	tra (0.246184)
	ece (0.229305)
	liv (0.146284)
	spl (0.143184)