Non-Coding RNA Search

Ss1.1-ruio07_f24.5

Sequence:


               
               TTCTCCTAGATGAAGCAACCAGTGCACTGGATGCTGAAAATGAGTACCTTGTACAGCAAG
CTCTGGATCGACTGATGGAGGGAAGAACAGTGTTGATTATCGCCCATCGTCTGTCCACCA
TCAAGAATGCAAATATGGTAGCTGTTCTTGACCAGGGAAGAATCACTGAATGTGGGAAAC
ATGAAGAGCTGCTCTCAAAACCAGATGGGATATACAGGAAATTAATGAACAAACAGAGTT
TTATTTCAGCATAAAGAAGCAATTACTGGTAAACTTTAAAGCAAAGCAGCATTGCAGGGG
GGAAAAAACTCAGGCTATGTGAAATCTGTAAATCATACTTCAAGTTATTTGAAATCTGCC
TATTTTTTTCCAAAGTTTGTAAAATACTGTTTTGAGATGTACCTGTTCTCAAGAGTTTTA
ATAATTGTAACTTTCTAAATGTCTAGAGCACTGAAGTTATTTTCATGTTTTTGTACTTTT
ATCTTGGAATATTTTAATTAATACAGCATGGCACCTCATTCTTTTATCTGCTGTTATAAA
TTGAAGCTATTGTCAAATGACAGCTTTTAAAAGGGAATTATAAATAAAAAGCCTAATTAT
TTTAGGCCAGTTTACCAATCACTGTGTAATCGCTTGGTAGTATTCTACCTACATCTGGTC
TCATTTTGCCAGCTAGCATAATAGAAGGTGAAAATCTAATCCCTTATTTTATCCTGATAA
TCTCATAAAGCAAACTTGGCACACACACATTTACAGAAGTAGTTACTCACATGGCAAGGA
GGAAATATTTATATTTCCCATCTCCTCTGTCTTCAAAGATATTAAAGTTTAGGAATATAT
GTTCCTCTGGGATGAGACTGTGTTTGAATGTGTGCAGTTTTCAACATTTTTGGCACATGA
GAGCCTGATGAATTTGAAAAAGGGAAGAAACCCCATCTTTTGAACATGAAAACTTCTGTT
TTCATTGTTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCCTAGATGAAGCAACCAGTGCACTGGATGCTGAAAATGAGTACCTTGTACAGCAAG
CTCTGGATCGACTGATGGAGGGAAGAACAGTGTTGATTATCGCCCATCGTCTGTCCACCA
TCAAGAATGCAAATATGGTAGCTGTTCTTGACCAGGGAAGAATCACTGAATGTGGGAAAC
ATGAAGAGCTGCTCTCAAAACCAGATGGGATATACAGGAAATTAATGAACAAACAGAGTT
TTATTTCAGCATAAAGAAGCAATTACTGGTAAACTTTAAAGCAAAGCAGCATTGCAGGGG
GGAAAAAACTCAGGCTATGTGAAATCTGTAAATCATACTTCAAGTTATTTGAAATCTGCC
TATTTTTTTCCAAAGTTTGTAAAATACTGTTTTGAGATGTACCTGTTCTCAAGAGTTTTA
ATAATTGTAACTTTCTAAATGTCTAGAGCACTGAAGTTATTTTCATGTTTTTGTACTTTT
ATCTTGGAATATTTTAATTAATACAGCATGGCACCTCATTCTTTTATCTGCTGTTATAAA
TTGAAGCTATTGTCAAATGACAGCTTTTAAAAGGGAATTATAAATAAAAAGCCTAATTAT
TTTAGGCCAGTTTACCAATCACTGTGTAATCGCTTGGTAGTATTCTACCTACATCTGGTC
TCATTTTGCCAGCTAGCATAATAGAAGGTGAAAATCTAATCCCTTATTTTATCCTGATAA
TCTCATAAAGCAAACTTGGCACACACACATTTACAGAAGTAGTTACTCACATGGCAAGGA
GGAAATATTTATATTTCCCATCTCCTCTGTCTTCAAAGATATTAAAGTTTAGGAATATAT
GTTCCTCTGGGATGAGACTGTGTTTGAATGTGTGCAGTTTTCAACATTTTTGGCACATGA
GAGCCTGATGAATTTGAAAAAGGGAAGAAACCCCATCTTTTGAACATGAAAACTTCTGTT
TTCATTGTTCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9798822|gb|AAF98710.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9798822|gb|AAF98710.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               509-664, + strand, RNAz p=0.942029
               

               
               736-852, - strand, RNAz p=0.535468
               

               
               860-970, + strand, RNAz p=0.855888

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-664, + strand, RNAz p=0.942029
               

               
               736-852, - strand, RNAz p=0.535468
               

               
               860-970, + strand, RNAz p=0.855888

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC064930, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC064930, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               21-734, gnl|bosTau2|chr28 (384588-385325)
               

               
               21-734, gnl|Hg17|chr1 (225960894-225960159)
               


               
               736-970, gnl|bosTau2|chr28 (385621-385855)
               

               
               736-970, gnl|canFam2|chr4 (12744891-12745036)
               

               
               736-970, gnl|echTel1|scaffold_129439 (505-366)
               

               
               736-970, gnl|fr1|chrUn (126266857-126266698)
               

               
               736-970, gnl|Hg17|chr1 (225960138-225959935)
               

               
               736-970, gnl|hg17|chr15_random (285076-285216)
               

               
               736-970, gnl|loxAfr1|scaffold_112404 (1634-1492)
               

               
               736-970, gnl|mm7|chr8 (122541000-122540877)
               

               
               736-970, gnl|oryCun1|scaffold_123241 (7319-7177)
               

               
               736-970, gnl|panTro1|chrUn_random (7322820-7322680)
               

               
               736-970, gnl|rheMac2|chr7 (2550013-2550153)
               

               
               736-970, gnl|rn3|chr19 (54157050-54156924)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-734, gnl|bosTau2|chr28 (384588-385325)
               

               
               21-734, gnl|Hg17|chr1 (225960894-225960159)
               


               
               736-970, gnl|bosTau2|chr28 (385621-385855)
               

               
               736-970, gnl|canFam2|chr4 (12744891-12745036)
               

               
               736-970, gnl|echTel1|scaffold_129439 (505-366)
               

               
               736-970, gnl|fr1|chrUn (126266857-126266698)
               

               
               736-970, gnl|Hg17|chr1 (225960138-225959935)
               

               
               736-970, gnl|hg17|chr15_random (285076-285216)
               

               
               736-970, gnl|loxAfr1|scaffold_112404 (1634-1492)
               

               
               736-970, gnl|mm7|chr8 (122541000-122540877)
               

               
               736-970, gnl|oryCun1|scaffold_123241 (7319-7177)
               

               
               736-970, gnl|panTro1|chrUn_random (7322820-7322680)
               

               
               736-970, gnl|rheMac2|chr7 (2550013-2550153)
               

               
               736-970, gnl|rn3|chr19 (54157050-54156924)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               eje (0.0988338)

	509-664, + strand, RNAz p=0.942029
	736-852, - strand, RNAz p=0.535468
	860-970, + strand, RNAz p=0.855888

	21-734, gnl\|bosTau2\|chr28 (384588-385325)
	21-734, gnl\|Hg17\|chr1 (225960894-225960159)

	736-970, gnl\|bosTau2\|chr28 (385621-385855)
	736-970, gnl\|canFam2\|chr4 (12744891-12745036)
	736-970, gnl\|echTel1\|scaffold_129439 (505-366)
	736-970, gnl\|fr1\|chrUn (126266857-126266698)
	736-970, gnl\|Hg17\|chr1 (225960138-225959935)
	736-970, gnl\|hg17\|chr15_random (285076-285216)
	736-970, gnl\|loxAfr1\|scaffold_112404 (1634-1492)
	736-970, gnl\|mm7\|chr8 (122541000-122540877)
	736-970, gnl\|oryCun1\|scaffold_123241 (7319-7177)
	736-970, gnl\|panTro1\|chrUn_random (7322820-7322680)
	736-970, gnl\|rheMac2\|chr7 (2550013-2550153)
	736-970, gnl\|rn3\|chr19 (54157050-54156924)

	fce (0.271592)
	kid (0.259471)
	sin (0.174948)
	lun (0.150489)
	lin (0.145603)
	eje (0.0988338)