Non-Coding RNA Search

Ss1.1-ruio07_f6.5.5

Sequence:


               
               ATAGTGGTTGTTTTTCCTAAATGAAATAACTTTCTTCCCCTCACCTAAATTCTTTTCAGA
AGTTGCTGGCATTTGGGTCAAGGTTTTATTAAAAGCTACATTTTATAACACTGGCACAAA
AAAAAGTAGTTTCAAGCTTGTTTGCACAGTTCTTTTTTTCCATTGGAAATGGAATTCATT
GCCTTAGGTCTTTTAAAATAGTGTATTATCGTTGGGGCTGGCTCTGTGCTTGAAAACCAG
TTTATTTATAACCTGTTATAAGTGCTAAATCTGTTTGCAGTTAGGAAATGCAGAATTCAA
AGTGATCTCCTAGCTTGTAAGCAAACTGAGATGCACTATCCCTTTTCTATTAAAAAAAAA
AAGTTGAATGAGTTAATGTGTCAAGAAACCAACTCTAGTAAAGTGGGGTTTAATATTACC
CTTTCCTGTATGTGTTTTATCTAATTTTGGTTGTTAATATGGTGATAATTAAAAGTCAAG
GTAAACTTTAAATATTAAGATTTCTGAAATTGAGCTTGAATTATGCCACCATGCTTATGT
AAAAATGAAAGTGGCACCATGATAAAACTGAGAAGTTTCTCAGTTGTAGCAATTTTGATT
TATTCTTTCCTGTGACCTTCTTCCCTGTTGTCTTGAACCATAGCAAAAGGATACTGCATC
TCTTATCTGTAGTGCTGAGGTTTTTGAAGTTATAAAAAACACATCTCAGTCTCTCTTTCT
TGGAAGGAAAGTCCTGCTAATTGACAGTTCTAAGCAGAGAGAATTAAGATAATTGTGTTT
CATGTTTTGCACACAAATGCAGAATTTGTATAACCACATGACTTCATAGTTGTGATCTCA
AAGAAGGAATTTCTCCTTTATCTTTTTCTTGCAGTTCATGTAAGAACACTCTGAATCTCT
GAGCTTCTGAAGTGTTAGAGGTAGATAGAGACGACCTAGTAAAGATGTAGTTGTAATGTT
TTATCCATTTAGCATGGGTTTCTTTTTCTTTATGTACTCTAAGGTGACATATTTGTTCAG
CTCAGTGATATTACAGCTAAAGAAGTCATTCATTAGCAAAAAGAGAAGCAATCTCAACAA
ATCAGAAATGTTTCTTATTATTTTATATTGAGTTGAATATTTGCCTCTTAACACTTTTCT
ACATAGAAAACACAAGTCTCTTGAAGGGTTCTTCATAATTGCGTTGTAGAAGAATTTAGT
ATGTCATAAGCACTTCTTAAAGAATTGACATTCAACTGTAGTAGTATCTGTGTTGGTTAA
TTTTCTTCTGAGCCCCATTATGAGTTTGAGAAAAATTGAAAGAAATTAGATCATCTGGTT
CTGTTAAATTGTTACATGTATCTTGCTTAAGTTTTTGTTCATTAATTTATATCCACCCAA
TTACATAAAGCAAATTTGGAGGAAACATCTGAAGTTGTGCAATATTTTCAGTGATATTAC
TTTATGTTTGTGTTTTAGAAACATGTCTGTCATCAAGTGTTACAGTCAAACTTTTTTTCT
AGATTGTTAAAATTAGTAAATGAGCTTTTTTTTTTAATCATCTTCTATGTTGCTGTTAGT
CTCTATTACAAGGCTTCTTTCACAGAAGTTTGGCAATAATATTGAAGGAACCAGGATTGA
GCTGAATGCCTGTTTTTTTTTTAAAATAGATACTTTGTATTCTTTAATTTTGATCTCCAC
ATACCATGTTAAGAAAAATAAATTTTGGCTTTTACCAAGTTAAATAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCTTTTAAAAGTTTCCTTGGGGGGGCCAA
GGCTACCCCTTCCCCATTTTTTTTGTAAAAGGGGGCCCATTTTGGGATTTGTTTAAAAAA
CAAGGCATGGGGCTTGTTTATAAATTTGGTCCCATCCTGAGCCTGCCCGTCGGACCCCGG
CCTGGTGGAATGACTCCTGATTCGGCGGCGGCGCCCGCCTGTGCCAAGGGGCCTCGTGAG
AGCTGGGGCTCCGGCTCGGCTCTCAGAGTCCATCGGTCTCCAGCACAGCTCCCTGTCTCG
CGCAGGGTCTCTGCCCCAAGACCCTCAGACAGCCCTGCTCTCAGCTGCGCTGCCGAGGAG
AGCCAGCCTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGTGGTTGTTTTTCCTAAATGAAATAACTTTCTTCCCCTCACCTAAATTCTTTTCAGA
AGTTGCTGGCATTTGGGTCAAGGTTTTATTAAAAGCTACATTTTATAACACTGGCACAAA
AAAAAGTAGTTTCAAGCTTGTTTGCACAGTTCTTTTTTTCCATTGGAAATGGAATTCATT
GCCTTAGGTCTTTTAAAATAGTGTATTATCGTTGGGGCTGGCTCTGTGCTTGAAAACCAG
TTTATTTATAACCTGTTATAAGTGCTAAATCTGTTTGCAGTTAGGAAATGCAGAATTCAA
AGTGATCTCCTAGCTTGTAAGCAAACTGAGATGCACTATCCCTTTTCTATTAAAAAAAAA
AAGTTGAATGAGTTAATGTGTCAAGAAACCAACTCTAGTAAAGTGGGGTTTAATATTACC
CTTTCCTGTATGTGTTTTATCTAATTTTGGTTGTTAATATGGTGATAATTAAAAGTCAAG
GTAAACTTTAAATATTAAGATTTCTGAAATTGAGCTTGAATTATGCCACCATGCTTATGT
AAAAATGAAAGTGGCACCATGATAAAACTGAGAAGTTTCTCAGTTGTAGCAATTTTGATT
TATTCTTTCCTGTGACCTTCTTCCCTGTTGTCTTGAACCATAGCAAAAGGATACTGCATC
TCTTATCTGTAGTGCTGAGGTTTTTGAAGTTATAAAAAACACATCTCAGTCTCTCTTTCT
TGGAAGGAAAGTCCTGCTAATTGACAGTTCTAAGCAGAGAGAATTAAGATAATTGTGTTT
CATGTTTTGCACACAAATGCAGAATTTGTATAACCACATGACTTCATAGTTGTGATCTCA
AAGAAGGAATTTCTCCTTTATCTTTTTCTTGCAGTTCATGTAAGAACACTCTGAATCTCT
GAGCTTCTGAAGTGTTAGAGGTAGATAGAGACGACCTAGTAAAGATGTAGTTGTAATGTT
TTATCCATTTAGCATGGGTTTCTTTTTCTTTATGTACTCTAAGGTGACATATTTGTTCAG
CTCAGTGATATTACAGCTAAAGAAGTCATTCATTAGCAAAAAGAGAAGCAATCTCAACAA
ATCAGAAATGTTTCTTATTATTTTATATTGAGTTGAATATTTGCCTCTTAACACTTTTCT
ACATAGAAAACACAAGTCTCTTGAAGGGTTCTTCATAATTGCGTTGTAGAAGAATTTAGT
ATGTCATAAGCACTTCTTAAAGAATTGACATTCAACTGTAGTAGTATCTGTGTTGGTTAA
TTTTCTTCTGAGCCCCATTATGAGTTTGAGAAAAATTGAAAGAAATTAGATCATCTGGTT
CTGTTAAATTGTTACATGTATCTTGCTTAAGTTTTTGTTCATTAATTTATATCCACCCAA
TTACATAAAGCAAATTTGGAGGAAACATCTGAAGTTGTGCAATATTTTCAGTGATATTAC
TTTATGTTTGTGTTTTAGAAACATGTCTGTCATCAAGTGTTACAGTCAAACTTTTTTTCT
AGATTGTTAAAATTAGTAAATGAGCTTTTTTTTTTAATCATCTTCTATGTTGCTGTTAGT
CTCTATTACAAGGCTTCTTTCACAGAAGTTTGGCAATAATATTGAAGGAACCAGGATTGA
GCTGAATGCCTGTTTTTTTTTTAAAATAGATACTTTGTATTCTTTAATTTTGATCTCCAC
ATACCATGTTAAGAAAAATAAATTTTGGCTTTTACCAAGTTAAATAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCTTTTAAAAGTTTCCTTGGGGGGGCCAA
GGCTACCCCTTCCCCATTTTTTTTGTAAAAGGGGGCCCATTTTGGGATTTGTTTAAAAAA
CAAGGCATGGGGCTTGTTTATAAATTTGGTCCCATCCTGAGCCTGCCCGTCGGACCCCGG
CCTGGTGGAATGACTCCTGATTCGGCGGCGGCGCCCGCCTGTGCCAAGGGGCCTCGTGAG
AGCTGGGGCTCCGGCTCGGCTCTCAGAGTCCATCGGTCTCCAGCACAGCTCCCTGTCTCG
CGCAGGGTCTCTGCCCCAAGACCCTCAGACAGCCCTGCTCTCAGCTGCGCTGCCGAGGAG
AGCCAGCCTGCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               217-375, + strand, RNAz p=0.791437

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-375, + strand, RNAz p=0.791437

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014372, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014372, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-471, gnl|bosTau2|chr3 (67254183-67253711)
               

               
               1-471, gnl|Hg17|chr1 (51449351-51449798)
               

               
               1-471, gnl|Mm7|chr4 (108830355-108829914)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-471, gnl|bosTau2|chr3 (67254183-67253711)
               

               
               1-471, gnl|Hg17|chr1 (51449351-51449798)
               

               
               1-471, gnl|Mm7|chr4 (108830355-108829914)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

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               fco (2.67254)
               

               
               bfe (2.24786)
               

               
               ret (1.931)
               

               
               kid (1.68656)
               

               
               mgp (0.692042)
               

               
               tes (0.623441)
               

               
               tra (0.61546)
               

               
               isp (0.451128)
               

               
               liv (0.438853)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               ldo (0.291008)
               

               
               hyp (0.285673)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (2.67254)
               

               
               bfe (2.24786)
               

               
               ret (1.931)
               

               
               kid (1.68656)
               

               
               mgp (0.692042)
               

               
               tes (0.623441)
               

               
               tra (0.61546)
               

               
               isp (0.451128)
               

               
               liv (0.438853)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               ldo (0.291008)
               

               
               hyp (0.285673)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	1-471, gnl\|bosTau2\|chr3 (67254183-67253711)
	1-471, gnl\|Hg17\|chr1 (51449351-51449798)
	1-471, gnl\|Mm7\|chr4 (108830355-108829914)

	fco (2.67254)
	bfe (2.24786)
	ret (1.931)
	kid (1.68656)
	mgp (0.692042)
	tes (0.623441)
	tra (0.61546)
	isp (0.451128)
	liv (0.438853)
	nms (0.427716)
	hea (0.408998)
	aor (0.390549)
	mga (0.32041)
	tbr (0.308356)
	fat (0.294855)
	ldo (0.291008)
	hyp (0.285673)
	ste (0.270416)
	pla (0.267344)
	cbe (0.239234)
	rec (0.17307)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	eli (0.151814)
	spl (0.143184)
	hlv (0.139256)
	ute (0.132784)
	ova (0.129132)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)