Ss1.1-ruio07_g5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTAGGTGGTCCGCGGCGGCGCCATTAAAGCGAGGAGGAGGCGAGAGGGGCCGCCGCT GTGTCTTATTCTTTTTTAGTGCAGCGGGCGAGAGCGGGCGTGCGCGCCGCGCGAGAGTGG GAGGCGAGGGGGGCAGGCCAGGGAGAGGCGCAGGAGCCTGTGCAGCCGCGCGCGCCGTCT CTGTCTTGTTGTGTGCCTCGCGCGGCGGAGCGGGCGCGCGGCGGCGGCGGGGATTACTTT GCTGCTAGTTTCGGCTCGCGGCGGCGGCGGGTGTCGTCTCGGCGGCGGCGGCGGCGGTAG CGCTATGTCGGAGGAGCAGTTCGGCGGGGACGGGGCGGCGGCGGCGGCGACGGCGGCGGT AGGCGGCTCGGCGGGCGAGCAGGAGGGAGCCATGGTGGCGGCGGCGCCGGGGGCAGCGGC GGCGGCGGGAAGCGGAGCCGGGACCGGGGGCGGAACCGCGGCTGCTGGCACGGAAGGGGG CAGCGCCGAGTCGGAGGGGGCGAAGATCGACGCCAGTAAGAACGAGGAGGACGAAGGCCA TTCAAACTCCTCCCCACGACACACTGAAGCAGCGACGGCACAGCGGGAAGAATGGAAAAT GTTTATAGGAGGCCTTAGCTGGGACACTACAAAGAAAGATCTGAAGGACTACTTCTCCAA ATTTGGTGAAGTCGTAGACTGCACTCTGAAGTTAGATCCTATCACAGGGCGATCAAGGGG GTTTGGCTTTGTGCTATTTAAAGAATCGGAGAGTGTAGATAAGGTCATGGATCAGAAAGA ACATAAGTTGAATGGGAAGGTGATTGATCCTAAAAGGGCCAAAGCCATGAAAACAAAAGA GCCTGTTAAAAAAATTTTTGTTGGTGGCCTTTCTCCAGATACACCTGAAGAGAAAATAAG GGAGTACTTTGGTGGTTTTGGTGAGGTTGAATCCATAGAGCTCCCCATGGACAACAAGAC CAATAAGAGGCGTGGATTCTGCTTTATTACCTTTAAGGAAGAGGAACCAGTGAAGAAGAT AATGGAGAAGAAATACCACAATGTTGGTCTTAGTAAATGTGAAATAAAAGTAGCCATGTC AAAGGAACAGTATCAGCAACAGCAGCAGTGGGGATCTAGAGGAGGATTTGCAGGAAGAGC TCGTGGAAGAGGTGGTGACCAGCAGAGTGGTTATGGGAAAGTATCCAGGCGAGGTGGTCA TCAAAATAGCTACAAACCATACTAAATTATTCCATTTGCAACTTATCCCCAACAGGTGGT GAAGCAGTATTTTCCAAATTGAAGATTCATTTGAAGGTGGCTCCTGCCACCTGCTAATAG CAGTTCAAACTAAATTTTTTGTATCAAGTCCCTGAATGGAAGTATGACGTTGGGTCCCTC TGAAGTTTAATTCTGAGTTCTCATTAAAAGAAATTTGCTTTCATTGTTTTATTTCTTAAT TGCTATGCTTCAGAATCAATTTGTGTTTTATGCCCCACCCCCGCCCCCAGTATTGTAGAG CAAGTCTTGTGTTAAAAGCCCAGTGTGACAGTGTCATGATGTAGTAGTGTCTTACTGGTT TTTTAATAAATCCTTTTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGTTTTATGC CCCACCCCCGCCCCCAGTATTGTAGAGCAAGTCTTGTGTTAAAAGCCCAGTGTGACAGTG TCATGATGTAGTAGTGTCTTACTGGTTTTTTAATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTAGGTGGTCCGCGGCGGCGCCATTAAAGCGAGGAGGAGGCGAGAGGGGCCGCCGCT GTGTCTTATTCTTTTTTAGTGCAGCGGGCGAGAGCGGGCGTGCGCGCCGCGCGAGAGTGG GAGGCGAGGGGGGCAGGCCAGGGAGAGGCGCAGGAGCCTGTGCAGCCGCGCGCGCCGTCT CTGTCTTGTTGTGTGCCTCGCGCGGCGGAGCGGGCGCGCGGCGGCGGCGGGGATTACTTT GCTGCTAGTTTCGGCTCGCGGCGGCGGCGGGTGTCGTCTCGGCGGCGGCGGCGGCGGTAG CGCTATGTCGGAGGAGCAGTTCGGCGGGGACGGGGCGGCGGCGGCGGCGACGGCGGCGGT AGGCGGCTCGGCGGGCGAGCAGGAGGGAGCCATGGTGGCGGCGGCGCCGGGGGCAGCGGC GGCGGCGGGAAGCGGAGCCGGGACCGGGGGCGGAACCGCGGCTGCTGGCACGGAAGGGGG CAGCGCCGAGTCGGAGGGGGCGAAGATCGACGCCAGTAAGAACGAGGAGGACGAAGGCCA TTCAAACTCCTCCCCACGACACACTGAAGCAGCGACGGCACAGCGGGAAGAATGGAAAAT GTTTATAGGAGGCCTTAGCTGGGACACTACAAAGAAAGATCTGAAGGACTACTTCTCCAA ATTTGGTGAAGTCGTAGACTGCACTCTGAAGTTAGATCCTATCACAGGGCGATCAAGGGG GTTTGGCTTTGTGCTATTTAAAGAATCGGAGAGTGTAGATAAGGTCATGGATCAGAAAGA ACATAAGTTGAATGGGAAGGTGATTGATCCTAAAAGGGCCAAAGCCATGAAAACAAAAGA GCCTGTTAAAAAAATTTTTGTTGGTGGCCTTTCTCCAGATACACCTGAAGAGAAAATAAG GGAGTACTTTGGTGGTTTTGGTGAGGTTGAATCCATAGAGCTCCCCATGGACAACAAGAC CAATAAGAGGCGTGGATTCTGCTTTATTACCTTTAAGGAAGAGGAACCAGTGAAGAAGAT AATGGAGAAGAAATACCACAATGTTGGTCTTAGTAAATGTGAAATAAAAGTAGCCATGTC AAAGGAACAGTATCAGCAACAGCAGCAGTGGGGATCTAGAGGAGGATTTGCAGGAAGAGC TCGTGGAAGAGGTGGTGACCAGCAGAGTGGTTATGGGAAAGTATCCAGGCGAGGTGGTCA TCAAAATAGCTACAAACCATACTAAATTATTCCATTTGCAACTTATCCCCAACAGGTGGT GAAGCAGTATTTTCCAAATTGAAGATTCATTTGAAGGTGGCTCCTGCCACCTGCTAATAG CAGTTCAAACTAAATTTTTTGTATCAAGTCCCTGAATGGAAGTATGACGTTGGGTCCCTC TGAAGTTTAATTCTGAGTTCTCATTAAAAGAAATTTGCTTTCATTGTTTTATTTCTTAAT TGCTATGCTTCAGAATCAATTTGTGTTTTATGCCCCACCCCCGCCCCCAGTATTGTAGAG CAAGTCTTGTGTTAAAAGCCCAGTGTGACAGTGTCATGATGTAGTAGTGTCTTACTGGTT TTTTAATAAATCCTTTTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGTTTTATGC CCCACCCCCGCCCCCAGTATTGTAGAGCAAGTCTTGTGTTAAAAGCCCAGTGTGACAGTG TCATGATGTAGTAGTGTCTTACTGGTTTTTTAATAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1253-1371, + strand, RNAz p=0.638715 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1253-1371, + strand, RNAz p=0.638715 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001003810, + |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 1-537, gnl|bosTau2|chr6 (54094897-54095433) | |
| 1-537, gnl|Hg17|chr4 (83652316-83651778) | |
| 1-537, gnl|Mm7|chr5 (99193717-99193173) | |
| 581-1107, gnl|bosTau2|chr12 (6733883-6734413) | |
| 581-1107, gnl|Hg17|chr4 (83707593-83705584) | |
| 581-1107, gnl|Mm7|chr5 (99253514-99251705) | |
| 1253-1586, gnl|bosTau2|chr6 (54111748-54112076) | |
| 1253-1586, gnl|canFam2|chr32 (9287707-9287374) | |
| 1253-1586, gnl|canFam2|chr32 (9287322-9287702) | |
| 1253-1586, gnl|dasNov1|scaffold_188 (138373-138712) | |
| 1253-1586, gnl|dasNov1|scaffold_188 (138741-138378) | |
| 1253-1586, gnl|echTel1|scaffold_318764 (6018-6347) | |
| 1253-1586, gnl|echTel1|scaffold_318764 (6386-6023) | |
| 1253-1586, gnl|galGal2|chr4 (46998098-46998408) | |
| 1253-1586, gnl|galGal2|chr4 (46998441-46998103) | |
| 1253-1586, gnl|hg17|chr4 (83632123-83632485) | |
| 1253-1586, gnl|Hg17|chr4 (83632489-83632161) | |
| 1253-1586, gnl|hg17|chrX (63048209-63048558) | |
| 1253-1586, gnl|loxAfr1|scaffold_30031 (4299-3969) | |
| 1253-1586, gnl|loxAfr1|scaffold_30031 (3927-4294) | |
| 1253-1586, gnl|mm7|chr5 (99176113-99175780) | |
| 1253-1586, gnl|mm7|chr5 (99175727-99176113) | |
| 1253-1586, gnl|Mm7|chr5 (99176117-99175783) | |
| 1253-1586, gnl|monDom2|scaffold_132 (2097236-2096904) | |
| 1253-1586, gnl|monDom2|scaffold_132 (2096844-2097234) | |
| 1253-1586, gnl|oryCun1|scaffold_213288 (13192-12865) | |
| 1253-1586, gnl|oryCun1|scaffold_213288 (12810-13192) | |
| 1253-1586, gnl|panTro1|chr3 (50076725-50076363) | |
| 1253-1586, gnl|panTro1|chrX (64816731-64817080) | |
| 1253-1586, gnl|rheMac2|chr5 (47250032-47249666) | |
| 1253-1586, gnl|rheMac2|chrX (62821217-62821560) | |
| 1253-1586, gnl|rn3|chr14 (10935665-10935994) | |
| 1253-1586, gnl|rn3|chr14 (10936046-10935665) | |
| 1253-1586, gnl|xenTro1|scaffold_867 (433219-432901) | |
| 1253-1586, gnl|xenTro1|scaffold_867 (432841-433215) | |
| 1609-1716, gnl|bosTau2|chr6 (54111957-54112059) | |
| 1609-1716, gnl|canFam2|chr32 (9287707-9287374) | |
| 1609-1716, gnl|canFam2|chr32 (9287322-9287702) | |
| 1609-1716, gnl|dasNov1|scaffold_188 (138373-138712) | |
| 1609-1716, gnl|dasNov1|scaffold_188 (138741-138378) | |
| 1609-1716, gnl|echTel1|scaffold_318764 (6018-6347) | |
| 1609-1716, gnl|echTel1|scaffold_318764 (6386-6023) | |
| 1609-1716, gnl|galGal2|chr4 (46998098-46998408) | |
| 1609-1716, gnl|galGal2|chr4 (46998441-46998103) | |
| 1609-1716, gnl|hg17|chr4 (83632123-83632485) | |
| 1609-1716, gnl|Hg17|chr4 (83632280-83632178) | |
| 1609-1716, gnl|hg17|chrX (63048209-63048558) | |
| 1609-1716, gnl|loxAfr1|scaffold_30031 (4299-3969) | |
| 1609-1716, gnl|loxAfr1|scaffold_30031 (3927-4294) | |
| 1609-1716, gnl|mm7|chr5 (99176113-99175780) | |
| 1609-1716, gnl|mm7|chr5 (99175727-99176113) | |
| 1609-1716, gnl|Mm7|chr5 (99175909-99175800) | |
| 1609-1716, gnl|monDom2|scaffold_132 (2097236-2096904) | |
| 1609-1716, gnl|monDom2|scaffold_132 (2096844-2097234) | |
| 1609-1716, gnl|oryCun1|scaffold_213288 (13192-12865) | |
| 1609-1716, gnl|oryCun1|scaffold_213288 (12810-13192) | |
| 1609-1716, gnl|panTro1|chr3 (50076725-50076363) | |
| 1609-1716, gnl|panTro1|chrX (64816731-64817080) | |
| 1609-1716, gnl|rheMac2|chr5 (47250032-47249666) | |
| 1609-1716, gnl|rheMac2|chrX (62821217-62821560) | |
| 1609-1716, gnl|rn3|chr14 (10935665-10935994) | |
| 1609-1716, gnl|rn3|chr14 (10936046-10935665) | |
| 1609-1716, gnl|xenTro1|scaffold_867 (433219-432901) | |
| 1609-1716, gnl|xenTro1|scaffold_867 (432841-433215) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-537, gnl|bosTau2|chr6 (54094897-54095433) | |
| 1-537, gnl|Hg17|chr4 (83652316-83651778) | |
| 1-537, gnl|Mm7|chr5 (99193717-99193173) | |
| 581-1107, gnl|bosTau2|chr12 (6733883-6734413) | |
| 581-1107, gnl|Hg17|chr4 (83707593-83705584) | |
| 581-1107, gnl|Mm7|chr5 (99253514-99251705) | |
| 1253-1586, gnl|bosTau2|chr6 (54111748-54112076) | |
| 1253-1586, gnl|canFam2|chr32 (9287707-9287374) | |
| 1253-1586, gnl|canFam2|chr32 (9287322-9287702) | |
| 1253-1586, gnl|dasNov1|scaffold_188 (138373-138712) | |
| 1253-1586, gnl|dasNov1|scaffold_188 (138741-138378) | |
| 1253-1586, gnl|echTel1|scaffold_318764 (6018-6347) | |
| 1253-1586, gnl|echTel1|scaffold_318764 (6386-6023) | |
| 1253-1586, gnl|galGal2|chr4 (46998098-46998408) | |
| 1253-1586, gnl|galGal2|chr4 (46998441-46998103) | |
| 1253-1586, gnl|hg17|chr4 (83632123-83632485) | |
| 1253-1586, gnl|Hg17|chr4 (83632489-83632161) | |
| 1253-1586, gnl|hg17|chrX (63048209-63048558) | |
| 1253-1586, gnl|loxAfr1|scaffold_30031 (4299-3969) | |
| 1253-1586, gnl|loxAfr1|scaffold_30031 (3927-4294) | |
| 1253-1586, gnl|mm7|chr5 (99176113-99175780) | |
| 1253-1586, gnl|mm7|chr5 (99175727-99176113) | |
| 1253-1586, gnl|Mm7|chr5 (99176117-99175783) | |
| 1253-1586, gnl|monDom2|scaffold_132 (2097236-2096904) | |
| 1253-1586, gnl|monDom2|scaffold_132 (2096844-2097234) | |
| 1253-1586, gnl|oryCun1|scaffold_213288 (13192-12865) | |
| 1253-1586, gnl|oryCun1|scaffold_213288 (12810-13192) | |
| 1253-1586, gnl|panTro1|chr3 (50076725-50076363) | |
| 1253-1586, gnl|panTro1|chrX (64816731-64817080) | |
| 1253-1586, gnl|rheMac2|chr5 (47250032-47249666) | |
| 1253-1586, gnl|rheMac2|chrX (62821217-62821560) | |
| 1253-1586, gnl|rn3|chr14 (10935665-10935994) | |
| 1253-1586, gnl|rn3|chr14 (10936046-10935665) | |
| 1253-1586, gnl|xenTro1|scaffold_867 (433219-432901) | |
| 1253-1586, gnl|xenTro1|scaffold_867 (432841-433215) | |
| 1609-1716, gnl|bosTau2|chr6 (54111957-54112059) | |
| 1609-1716, gnl|canFam2|chr32 (9287707-9287374) | |
| 1609-1716, gnl|canFam2|chr32 (9287322-9287702) | |
| 1609-1716, gnl|dasNov1|scaffold_188 (138373-138712) | |
| 1609-1716, gnl|dasNov1|scaffold_188 (138741-138378) | |
| 1609-1716, gnl|echTel1|scaffold_318764 (6018-6347) | |
| 1609-1716, gnl|echTel1|scaffold_318764 (6386-6023) | |
| 1609-1716, gnl|galGal2|chr4 (46998098-46998408) | |
| 1609-1716, gnl|galGal2|chr4 (46998441-46998103) | |
| 1609-1716, gnl|hg17|chr4 (83632123-83632485) | |
| 1609-1716, gnl|Hg17|chr4 (83632280-83632178) | |
| 1609-1716, gnl|hg17|chrX (63048209-63048558) | |
| 1609-1716, gnl|loxAfr1|scaffold_30031 (4299-3969) | |
| 1609-1716, gnl|loxAfr1|scaffold_30031 (3927-4294) | |
| 1609-1716, gnl|mm7|chr5 (99176113-99175780) | |
| 1609-1716, gnl|mm7|chr5 (99175727-99176113) | |
| 1609-1716, gnl|Mm7|chr5 (99175909-99175800) | |
| 1609-1716, gnl|monDom2|scaffold_132 (2097236-2096904) | |
| 1609-1716, gnl|monDom2|scaffold_132 (2096844-2097234) | |
| 1609-1716, gnl|oryCun1|scaffold_213288 (13192-12865) | |
| 1609-1716, gnl|oryCun1|scaffold_213288 (12810-13192) | |
| 1609-1716, gnl|panTro1|chr3 (50076725-50076363) | |
| 1609-1716, gnl|panTro1|chrX (64816731-64817080) | |
| 1609-1716, gnl|rheMac2|chr5 (47250032-47249666) | |
| 1609-1716, gnl|rheMac2|chrX (62821217-62821560) | |
| 1609-1716, gnl|rn3|chr14 (10935665-10935994) | |
| 1609-1716, gnl|rn3|chr14 (10936046-10935665) | |
| 1609-1716, gnl|xenTro1|scaffold_867 (433219-432901) | |
| 1609-1716, gnl|xenTro1|scaffold_867 (432841-433215) |
| Expressed library(ies): 60 entry(ies) | More info |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
| cbl (1.83676) | |
| thg (1.52149) | |
| lnt (0.996158) | |
| ova (0.774793) | |
| elu (0.770713) | |
| gul (0.710353) | |
| tbr (0.616713) | |
| cmu (0.55918) | |
| pro (0.512033) | |
| nbm (0.496623) | |
| tra (0.492368) | |
| ebs (0.473205) | |
| pty (0.428143) | |
| amn (0.417711) | |
| tes (0.415628) | |
| hea (0.408998) | |
| lyg (0.399308) | |
| kid (0.389206) | |
| ldo (0.38801) | |
| ese (0.379507) | |
| pgl (0.35545) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| cje (0.330469) | |
| sme (0.305437) | |
| ski (0.29347) | |
| cte (0.29274) | |
| spl (0.286369) | |
| cga (0.279096) | |
| bla (0.248694) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| cty (0.20816) | |
| eje (0.197668) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| mga (0.160205) | |
| eli (0.151814) | |
| cag (0.151194) | |
| isp (0.150376) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| med (0.116252) |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (1.83676) | |
| thg (1.52149) | |
| lnt (0.996158) | |
| ova (0.774793) | |
| elu (0.770713) | |
| gul (0.710353) | |
| tbr (0.616713) | |
| cmu (0.55918) | |
| pro (0.512033) | |
| nbm (0.496623) | |
| tra (0.492368) | |
| ebs (0.473205) | |
| pty (0.428143) | |
| amn (0.417711) | |
| tes (0.415628) | |
| hea (0.408998) | |
| lyg (0.399308) | |
| kid (0.389206) | |
| ldo (0.38801) | |
| ese (0.379507) | |
| pgl (0.35545) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| cje (0.330469) | |
| sme (0.305437) | |
| ski (0.29347) | |
| cte (0.29274) | |
| spl (0.286369) | |
| cga (0.279096) | |
| bla (0.248694) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| cty (0.20816) | |
| eje (0.197668) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| mga (0.160205) | |
| eli (0.151814) | |
| cag (0.151194) | |
| isp (0.150376) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| med (0.116252) |