Non-Coding RNA Search

Ss1.1-ruio07_j22.5

Sequence:


               
               TAGATACATAGTGTAAATTAGATATAAATGAGGGCTATATGGCAGTAAAACTGCTAGTGC
CATTTTTCCTGTTTGCCTATTGTACATTTTTTATTTTTTTTTTGTACTCTGAACATTTTT
AGGGATCATACATTCTATCAGATTAGAGTTGGTTTGGGAATAAATATCTTCTAAAAAGAG
ATTTATCTTAAAATGAAAGTCCTGAAAAATTAGTTTATCAAGAGTTTATGAAGTCAAATA
TTCAATAGACATAGGCAGGAATAGGTAAACTCATGAAAGTCTTATCCTTTCAGTATACCA
GTATAACTTCGATATTACACGAGTAACATTGAGAAAACGCCATCAGCTTTGTTTGTTCCC
CCTTAATATTCTTGGGTTTTCTTTTTACATCTTTGGGAACAACTACATTAAAAACCTTAT
TAATCAGTATATCGGGAAGGATTAAGTGTTTGCTTTCTGAAGGAATGTTCTAGTAAGGTG
ATCAGAGAGGTTATTTTCTACCTAACTGGTATATGCCCTATACCTCTTGGGCATCCTTTG
TCTATAGAAAAATATTTTGACCTTTAGGTACATTTTGGGCTAGAAGTCAAATAATTCTAG
GGCCAATTTAAAAATCTTAGAATAATTTGTTTGCCTTTTATGCCTGTTTTAAAAGCCTTT
ACATTTTTGTCAGGTAATTTTTCCCAAGCCGTGAATATAATCTATTCAGAACATGTTTAT
GCTATCCATCCTGTTTTTAAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGATACATAGTGTAAATTAGATATAAATGAGGGCTATATGGCAGTAAAACTGCTAGTGC
CATTTTTCCTGTTTGCCTATTGTACATTTTTTATTTTTTTTTTGTACTCTGAACATTTTT
AGGGATCATACATTCTATCAGATTAGAGTTGGTTTGGGAATAAATATCTTCTAAAAAGAG
ATTTATCTTAAAATGAAAGTCCTGAAAAATTAGTTTATCAAGAGTTTATGAAGTCAAATA
TTCAATAGACATAGGCAGGAATAGGTAAACTCATGAAAGTCTTATCCTTTCAGTATACCA
GTATAACTTCGATATTACACGAGTAACATTGAGAAAACGCCATCAGCTTTGTTTGTTCCC
CCTTAATATTCTTGGGTTTTCTTTTTACATCTTTGGGAACAACTACATTAAAAACCTTAT
TAATCAGTATATCGGGAAGGATTAAGTGTTTGCTTTCTGAAGGAATGTTCTAGTAAGGTG
ATCAGAGAGGTTATTTTCTACCTAACTGGTATATGCCCTATACCTCTTGGGCATCCTTTG
TCTATAGAAAAATATTTTGACCTTTAGGTACATTTTGGGCTAGAAGTCAAATAATTCTAG
GGCCAATTTAAAAATCTTAGAATAATTTGTTTGCCTTTTATGCCTGTTTTAAAAGCCTTT
ACATTTTTGTCAGGTAATTTTTCCCAAGCCGTGAATATAATCTATTCAGAACATGTTTAT
GCTATCCATCCTGTTTTTAAATTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               499-605, + strand, RNAz p=0.856394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               499-605, + strand, RNAz p=0.856394

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chrX (37705321-37704583)
               

               
               1-744, gnl|Hg17|chrX (23762299-23761555)
               

               
               1-744, gnl|Mm7|chrX (89663510-89664316)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chrX (37705321-37704583)
               

               
               1-744, gnl|Hg17|chrX (23762299-23761555)
               

               
               1-744, gnl|Mm7|chrX (89663510-89664316)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tbr (0.154178)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	1-744, gnl\|bosTau2\|chrX (37705321-37704583)
	1-744, gnl\|Hg17\|chrX (23762299-23761555)
	1-744, gnl\|Mm7\|chrX (89663510-89664316)