Non-Coding RNA Search

Ss1.1-ruio07_k19.5

Sequence:


               
               TTTGATAGTGAATCATGACTCTAAGAGAGAGATTTATGTGGCAAAAATATAGTATATGAT
AGATCAGCCGGTTTTTTGTTTTTTTTTTTTTTTTAATAAGGCTAAAACCTGTAAGTTCAT
AGATGTTCCTGTGTTACAAAATGTCTTGTTGAGCTTGGCAAAGAATAAGTCATTCTTGGA
ATACTTCTGTATGACTGTTGCCTATCTCAGTGTCACTGTGCTTGTGATCTTGGATAGCTT
GTATATGTGATAGCTTGATTAATAAGAAAACAATATAAAATTTGAAAATTCAATACAGGA
TCCAAAATGGTAAATGAAATGACTTAATACTCAGTGTTTTGGAGAGTATCCCTTTAAACT
TTTTGGTATGGTAGGATAGTTTGAAGGGTAACCTATGAACATGTAGCATGCATATATGTT
TCTATTTCATTGTAGCTTCTGATACATAGTGAAGTTCTTGGAAGAGGTACTGAGTCTTTG
ATTTTTGTTGTTATTCTTCTCAAGTGCAATATAACAATGTAACCAAACCTAGATATTTCA
GTCATTATTAATTTAGTAAACCTAATCTAAATGGAAATTTATTAGTATTTTTGTTAGCAG
GAAGGAGTGATTCTGCAATAGATGTACAAGTGAAATTATTTACCCTCCAAAGGTCCATTC
TACACTTTATTTCAGGCTGGACATGAACAGTTCCCTACTAGTTTTGAAACACTTTGCAAT
ATCTTAAAGACACTTCGAAGCTGTGTATATCAATTAATTTGCTATCTAAATAACATAGAA
AGTAACTTTCTTTATGTAGTTCTCTTGTGATCACCCACATTGGGTGAGACATAAAATGAG
TGTGTTCTAAAATTTGTCATTTGCTAACTTGATTTGAGTTAGTGAAAACTGGTACAGTGT
TCTGCTTACTAGTTTCCAATGTGTAACTGGTGTCTGTTCAATAAACTTGAGCATATGGTG
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGATAGTGAATCATGACTCTAAGAGAGAGATTTATGTGGCAAAAATATAGTATATGAT
AGATCAGCCGGTTTTTTGTTTTTTTTTTTTTTTTAATAAGGCTAAAACCTGTAAGTTCAT
AGATGTTCCTGTGTTACAAAATGTCTTGTTGAGCTTGGCAAAGAATAAGTCATTCTTGGA
ATACTTCTGTATGACTGTTGCCTATCTCAGTGTCACTGTGCTTGTGATCTTGGATAGCTT
GTATATGTGATAGCTTGATTAATAAGAAAACAATATAAAATTTGAAAATTCAATACAGGA
TCCAAAATGGTAAATGAAATGACTTAATACTCAGTGTTTTGGAGAGTATCCCTTTAAACT
TTTTGGTATGGTAGGATAGTTTGAAGGGTAACCTATGAACATGTAGCATGCATATATGTT
TCTATTTCATTGTAGCTTCTGATACATAGTGAAGTTCTTGGAAGAGGTACTGAGTCTTTG
ATTTTTGTTGTTATTCTTCTCAAGTGCAATATAACAATGTAACCAAACCTAGATATTTCA
GTCATTATTAATTTAGTAAACCTAATCTAAATGGAAATTTATTAGTATTTTTGTTAGCAG
GAAGGAGTGATTCTGCAATAGATGTACAAGTGAAATTATTTACCCTCCAAAGGTCCATTC
TACACTTTATTTCAGGCTGGACATGAACAGTTCCCTACTAGTTTTGAAACACTTTGCAAT
ATCTTAAAGACACTTCGAAGCTGTGTATATCAATTAATTTGCTATCTAAATAACATAGAA
AGTAACTTTCTTTATGTAGTTCTCTTGTGATCACCCACATTGGGTGAGACATAAAATGAG
TGTGTTCTAAAATTTGTCATTTGCTAACTTGATTTGAGTTAGTGAAAACTGGTACAGTGT
TCTGCTTACTAGTTTCCAATGTGTAACTGGTGTCTGTTCAATAAACTTGAGCATATGGTG
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               734-933, - strand, RNAz p=0.996324
               

               
               765-924, + strand, RNAz p=0.989478

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               734-933, - strand, RNAz p=0.996324
               

               
               765-924, + strand, RNAz p=0.989478

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               737-933, AM004928 KN-252-bone-marrow, Bos sp. Bos sp. cDNA clone C0007387f01 
(emb|AM004928.1|), blast E-value=0, identity=91.88% 
               

               
               737-933, CR552800 Normalized and Subtracted bovine embryonic and 
(emb|CR552800.2|), blast E-value=0, identity=91.88% 
               

               
               737-933, UMC-bcl_0A02-030-e01 Day 14 CL +8h prostaglandin F2-alpha bcl Bos 
(gb|CX949461.1|), blast E-value=0, identity=91.88% 
               

               
               737-933, UMC-bcl_0B02-028-b05 Day 14 CL from a pregnant animal bcl Bos 
(gb|CX950610.1|), blast E-value=0, identity=91.88% 
               

               
               737-933, UMC-bcl_0B02-029-e01 Day 14 CL +8h prostaglandin F2-alpha bcl Bos 
(gb|CX950701.1|), blast E-value=0, identity=91.88% 
               

               
               737-933, sh1-ank15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY478785.1|), blast E-value=0, identity=92.39%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               737-933, AM004928 KN-252-bone-marrow, Bos sp. Bos sp. cDNA clone C0007387f01 
(emb|AM004928.1|), blast E-value=0, identity=91.88% 
               

               
               737-933, CR552800 Normalized and Subtracted bovine embryonic and 
(emb|CR552800.2|), blast E-value=0, identity=91.88% 
               

               
               737-933, UMC-bcl_0A02-030-e01 Day 14 CL +8h prostaglandin F2-alpha bcl Bos 
(gb|CX949461.1|), blast E-value=0, identity=91.88% 
               

               
               737-933, UMC-bcl_0B02-028-b05 Day 14 CL from a pregnant animal bcl Bos 
(gb|CX950610.1|), blast E-value=0, identity=91.88% 
               

               
               737-933, UMC-bcl_0B02-029-e01 Day 14 CL +8h prostaglandin F2-alpha bcl Bos 
(gb|CX950701.1|), blast E-value=0, identity=91.88% 
               

               
               737-933, sh1-ank15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY478785.1|), blast E-value=0, identity=92.39%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002210, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002210, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               90-963, gnl|bosTau2|chr2 (5112805-5113683)
               

               
               90-963, gnl|canFam2|chr36 (31919535-31920204)
               

               
               90-963, gnl|dasNov1|scaffold_199285 (39420-40077)
               

               
               90-963, gnl|echTel1|scaffold_319278 (111670-111156)
               

               
               90-963, gnl|hg17|chr2 (187370283-187370898)
               

               
               90-963, gnl|Hg17|chr2 (187370285-187371134)
               

               
               90-963, gnl|loxAfr1|scaffold_41194 (13263-13875)
               

               
               90-963, gnl|mm7|chr2 (83649730-83650387)
               

               
               90-963, gnl|Mm7|chr2 (83649732-83650630)
               

               
               90-963, gnl|monDom2|scaffold_2 (91227071-91227658)
               

               
               90-963, gnl|panTro1|chr13 (77203979-77204595)
               

               
               90-963, gnl|rheMac2|chr12 (50294173-50294788)
               

               
               90-963, gnl|rn3|chr3 (66928351-66928989)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-963, gnl|bosTau2|chr2 (5112805-5113683)
               

               
               90-963, gnl|canFam2|chr36 (31919535-31920204)
               

               
               90-963, gnl|dasNov1|scaffold_199285 (39420-40077)
               

               
               90-963, gnl|echTel1|scaffold_319278 (111670-111156)
               

               
               90-963, gnl|hg17|chr2 (187370283-187370898)
               

               
               90-963, gnl|Hg17|chr2 (187370285-187371134)
               

               
               90-963, gnl|loxAfr1|scaffold_41194 (13263-13875)
               

               
               90-963, gnl|mm7|chr2 (83649730-83650387)
               

               
               90-963, gnl|Mm7|chr2 (83649732-83650630)
               

               
               90-963, gnl|monDom2|scaffold_2 (91227071-91227658)
               

               
               90-963, gnl|panTro1|chr13 (77203979-77204595)
               

               
               90-963, gnl|rheMac2|chr12 (50294173-50294788)
               

               
               90-963, gnl|rn3|chr3 (66928351-66928989)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               ret (0.901133)
               

               
               bfe (0.449573)
               

               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.901133)
               

               
               bfe (0.449573)
               

               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

	734-933, - strand, RNAz p=0.996324
	765-924, + strand, RNAz p=0.989478

	737-933, AM004928 KN-252-bone-marrow, Bos sp. Bos sp. cDNA clone C0007387f01 (emb\|AM004928.1\|), blast E-value=0, identity=91.88%
	737-933, CR552800 Normalized and Subtracted bovine embryonic and (emb\|CR552800.2\|), blast E-value=0, identity=91.88%
	737-933, UMC-bcl_0A02-030-e01 Day 14 CL +8h prostaglandin F2-alpha bcl Bos (gb\|CX949461.1\|), blast E-value=0, identity=91.88%
	737-933, UMC-bcl_0B02-028-b05 Day 14 CL from a pregnant animal bcl Bos (gb\|CX950610.1\|), blast E-value=0, identity=91.88%
	737-933, UMC-bcl_0B02-029-e01 Day 14 CL +8h prostaglandin F2-alpha bcl Bos (gb\|CX950701.1\|), blast E-value=0, identity=91.88%
	737-933, sh1-ank15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, (gb\|DY478785.1\|), blast E-value=0, identity=92.39%

	90-963, gnl\|bosTau2\|chr2 (5112805-5113683)
	90-963, gnl\|canFam2\|chr36 (31919535-31920204)
	90-963, gnl\|dasNov1\|scaffold_199285 (39420-40077)
	90-963, gnl\|echTel1\|scaffold_319278 (111670-111156)
	90-963, gnl\|hg17\|chr2 (187370283-187370898)
	90-963, gnl\|Hg17\|chr2 (187370285-187371134)
	90-963, gnl\|loxAfr1\|scaffold_41194 (13263-13875)
	90-963, gnl\|mm7\|chr2 (83649730-83650387)
	90-963, gnl\|Mm7\|chr2 (83649732-83650630)
	90-963, gnl\|monDom2\|scaffold_2 (91227071-91227658)
	90-963, gnl\|panTro1\|chr13 (77203979-77204595)
	90-963, gnl\|rheMac2\|chr12 (50294173-50294788)
	90-963, gnl\|rn3\|chr3 (66928351-66928989)

	ret (0.901133)
	bfe (0.449573)
	amn (0.417711)
	kid (0.389206)
	fat (0.294855)
	liv (0.292569)
	fce (0.271592)
	clu (0.239292)
	mgp (0.230681)
	nms (0.213858)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	isp (0.150376)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	nca (0.136874)
	ova (0.129132)
	tra (0.123092)
	nbm (0.0993246)