Ss1.1-ruio07_l14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTTTCTTGTTGATTCTCAATTCATGGTGGAGTCATTTAAGTTTATTTCTGGCATCTTG GCAGCCCTGAGTGCTATGATCTCTCTAGAAATTCCTCAAGTTAACATCATGACAAAAATG GACCTGCTGAGTAAGAAAGCTAAAAAGGAAATTGAGAAATTTCTAGATCCAGACATGTAT TCTTTATTAGATGACTCTACAAGTGAGTTAAGAAGTAAAAAATTCAAAAAATTGACCAAC GCTATATGTGGACTGATTGACGACTATAGCATGGTTCGATTTTTGCCTTACGATCAGTCA GATGAAGAAAGCATGAACATCGTATTACAGCATATTGATTTTGCCATTCAGTATGGAGAA GACTTAGAATTTAAAGAACCAAAGGAACATGAAGATGAGTCATCGTCAATGTTTGATGAA TATTTTCAAGAACACCAGAATGAATGAAGAGTTTATTTTAATATAACTGAATATGTGAGG AGCTTATAGAAGGCAGAACCTTCTCGTGGAAGATGGAATATAAGAAAGCTACTTATTTTA ATGAAAAAAAATAATACTTGGCTCTTTACAGCAAACAGTAGCATGCATGAATCAAGTTCT TAGCTATGCCAAAATAGCTGTTGTTTAAAGTGGTCTCTTTTAGTATTATTTTTAACAGCA TCAATTTAGATTTCAAAAGTCAAAATTGAAATGAATGTACATAGATTGTGTATAACATAA ATTAGCATCTGTGGTGCAATTAAGTCCAATCTGCTTACTTAGTTTTACTGTTTGATTTTT GTTAATTTTGAAGTTTTTTGGGAGGGGAGGAATTATTGTAACAAAATATATATATGTGTG TCTAAACAAAATAAGTCTGGAAGGATATAGATAAGACCATTGCTTATCTGTACCTTCCAG TTTTCCTACATTGAAAATATACTATTTGTACAATTAAAAAATGAAGAGTGACTGTGTTTT AATATATATGTATATAAATAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTTTCTTGTTGATTCTCAATTCATGGTGGAGTCATTTAAGTTTATTTCTGGCATCTTG GCAGCCCTGAGTGCTATGATCTCTCTAGAAATTCCTCAAGTTAACATCATGACAAAAATG GACCTGCTGAGTAAGAAAGCTAAAAAGGAAATTGAGAAATTTCTAGATCCAGACATGTAT TCTTTATTAGATGACTCTACAAGTGAGTTAAGAAGTAAAAAATTCAAAAAATTGACCAAC GCTATATGTGGACTGATTGACGACTATAGCATGGTTCGATTTTTGCCTTACGATCAGTCA GATGAAGAAAGCATGAACATCGTATTACAGCATATTGATTTTGCCATTCAGTATGGAGAA GACTTAGAATTTAAAGAACCAAAGGAACATGAAGATGAGTCATCGTCAATGTTTGATGAA TATTTTCAAGAACACCAGAATGAATGAAGAGTTTATTTTAATATAACTGAATATGTGAGG AGCTTATAGAAGGCAGAACCTTCTCGTGGAAGATGGAATATAAGAAAGCTACTTATTTTA ATGAAAAAAAATAATACTTGGCTCTTTACAGCAAACAGTAGCATGCATGAATCAAGTTCT TAGCTATGCCAAAATAGCTGTTGTTTAAAGTGGTCTCTTTTAGTATTATTTTTAACAGCA TCAATTTAGATTTCAAAAGTCAAAATTGAAATGAATGTACATAGATTGTGTATAACATAA ATTAGCATCTGTGGTGCAATTAAGTCCAATCTGCTTACTTAGTTTTACTGTTTGATTTTT GTTAATTTTGAAGTTTTTTGGGAGGGGAGGAATTATTGTAACAAAATATATATATGTGTG TCTAAACAAAATAAGTCTGGAAGGATATAGATAAGACCATTGCTTATCTGTACCTTCCAG TTTTCCTACATTGAAAATATACTATTTGTACAATTAAAAAATGAAGAGTGACTGTGTTTT AATATATATGTATATAAATAAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 788-945, + strand, RNAz p=0.999274 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 788-945, + strand, RNAz p=0.999274 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 38-158, gnl|bosTau2|chr17 (30263010-30263130) | |
| 38-158, gnl|canFam2|chr26 (11299607-11299759) | |
| 38-158, gnl|danRer3|chr21 (7194419-7194544) | |
| 38-158, gnl|dasNov1|scaffold_138545 (1587-1427) | |
| 38-158, gnl|echTel1|scaffold_146094 (943-1064) | |
| 38-158, gnl|fr1|chrUn (292379540-292379411) | |
| 38-158, gnl|galGal2|chr15 (5233806-5233661) | |
| 38-158, gnl|hg17|chr12 (109356333-109356486) | |
| 38-158, gnl|Hg17|chr12 (109356460-109356340) | |
| 38-158, gnl|loxAfr1|scaffold_8228 (19711-19864) | |
| 38-158, gnl|mm7|chr5 (121615536-121615389) | |
| 38-158, gnl|Mm7|chr5 (121615407-121615527) | |
| 38-158, gnl|monDom2|scaffold_97 (904184-904031) | |
| 38-158, gnl|oryCun1|scaffold_106916 (18247-18395) | |
| 38-158, gnl|panTro1|chr10 (111935381-111935535) | |
| 38-158, gnl|rheMac2|chr11 (111386451-111386604) | |
| 38-158, gnl|rn3|chr12 (35248698-35248844) | |
| 38-158, gnl|tetNig1|chrUn_random (90796789-90796929) | |
| 38-158, gnl|xenTro1|scaffold_501 (507294-507447) | |
| 383-983, gnl|bosTau2|chr17 (30264979-30265590) | |
| 383-983, gnl|Hg17|chr12 (109353623-109353050) | |
| 788-982, gnl|bosTau2|chr15 (26123183-26123369) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 38-158, gnl|bosTau2|chr17 (30263010-30263130) | |
| 38-158, gnl|canFam2|chr26 (11299607-11299759) | |
| 38-158, gnl|danRer3|chr21 (7194419-7194544) | |
| 38-158, gnl|dasNov1|scaffold_138545 (1587-1427) | |
| 38-158, gnl|echTel1|scaffold_146094 (943-1064) | |
| 38-158, gnl|fr1|chrUn (292379540-292379411) | |
| 38-158, gnl|galGal2|chr15 (5233806-5233661) | |
| 38-158, gnl|hg17|chr12 (109356333-109356486) | |
| 38-158, gnl|Hg17|chr12 (109356460-109356340) | |
| 38-158, gnl|loxAfr1|scaffold_8228 (19711-19864) | |
| 38-158, gnl|mm7|chr5 (121615536-121615389) | |
| 38-158, gnl|Mm7|chr5 (121615407-121615527) | |
| 38-158, gnl|monDom2|scaffold_97 (904184-904031) | |
| 38-158, gnl|oryCun1|scaffold_106916 (18247-18395) | |
| 38-158, gnl|panTro1|chr10 (111935381-111935535) | |
| 38-158, gnl|rheMac2|chr11 (111386451-111386604) | |
| 38-158, gnl|rn3|chr12 (35248698-35248844) | |
| 38-158, gnl|tetNig1|chrUn_random (90796789-90796929) | |
| 38-158, gnl|xenTro1|scaffold_501 (507294-507447) | |
| 383-983, gnl|bosTau2|chr17 (30264979-30265590) | |
| 383-983, gnl|Hg17|chr12 (109353623-109353050) | |
| 788-982, gnl|bosTau2|chr15 (26123183-26123369) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| mgp (0.230681) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.230681) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| ldo (0.0970026) |