Non-Coding RNA Search

Ss1.1-ruio07_n12.5

Sequence:


               
               GATGCTGCCGCTACTGAATGTTTACAAATTGCTTGCCTGCTAAAGTAAATGATTAAATTG
ACATTTTCTTACGATACCACCTTTTTTTTTTTTTTTTTTTGGAAGTGTCTTGATTGACTT
TGCTTAATTGGTGCAATACTGCTTGAACTCAGACCGCTAAAGGCACATCAGGTCCAATCT
TGTAAATTTAGATTTGCTGAAATATTGATTTATTTTTTGTTTTAATTTAAAGCACCTCAA
ATAAGCACTTCTTATGATATTTAACTGGTGCTACTGCTTCTGAGAACCCCGTGTTATGGA
TTTTACACTCTCGAAGGCCTGGAATGCAGTAAAGGTGTGTAGATCACTGAGGGAGTCTTG
TTTGTTTGTTTGTTTTTTTAAGAATAAATAAGAAAAAAAATAAAAGAACGCTCTCCTTAC
AAACAGCTGTTTTTCCATAGTCTGGAGTTCTGGTTATGTGATGCATTTTTCTGTCAATAC
TATAGCGTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCTGCCGCTACTGAATGTTTACAAATTGCTTGCCTGCTAAAGTAAATGATTAAATTG
ACATTTTCTTACGATACCACCTTTTTTTTTTTTTTTTTTTGGAAGTGTCTTGATTGACTT
TGCTTAATTGGTGCAATACTGCTTGAACTCAGACCGCTAAAGGCACATCAGGTCCAATCT
TGTAAATTTAGATTTGCTGAAATATTGATTTATTTTTTGTTTTAATTTAAAGCACCTCAA
ATAAGCACTTCTTATGATATTTAACTGGTGCTACTGCTTCTGAGAACCCCGTGTTATGGA
TTTTACACTCTCGAAGGCCTGGAATGCAGTAAAGGTGTGTAGATCACTGAGGGAGTCTTG
TTTGTTTGTTTGTTTTTTTAAGAATAAATAAGAAAAAAAATAAAAGAACGCTCTCCTTAC
AAACAGCTGTTTTTCCATAGTCTGGAGTTCTGGTTATGTGATGCATTTTTCTGTCAATAC
TATAGCGTTGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr3 (40812319-40811860)
               

               
               1-492, gnl|Hg17|chr1 (90113506-90113966)
               

               
               1-492, gnl|Mm7|chr5 (104991672-104992165)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr3 (40812319-40811860)
               

               
               1-492, gnl|Hg17|chr1 (90113506-90113966)
               

               
               1-492, gnl|Mm7|chr5 (104991672-104992165)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               vin (0.332557)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

	1-492, gnl\|bosTau2\|chr3 (40812319-40811860)
	1-492, gnl\|Hg17\|chr1 (90113506-90113966)
	1-492, gnl\|Mm7\|chr5 (104991672-104992165)

	vin (0.332557)
	col (0.195008)
	sag (0.182715)
	fbs (0.175346)
	nje (0.16592)
	lnt (0.142308)
	kid (0.129735)
	thg (0.126791)