Non-Coding RNA Search

Ss1.1-ruio07_o1.5

Sequence:


               
               CCACGCGTCCGGGGGGAGAAATCACCAGTCTCTGCATTTTTAATTGTTTCTTTAAGCCCA
TCTAAGAAAACTAAGTGCTTGCTCCTTTCCTACAGATCAGATAAATCAGTTATCAAAGTG
AGGCCAAGAACTGGAACAACCACTGAGATGCTTCAAAAAAAACTTAGCAAGACCAAGAAA
CAACTCATCCACTGCCAAGACGACAAATACTCATTTCCACCCAAAAGCTATCATTGAAAG
CTACCCTTTGTGCACTGCACATGGTGTAGGTTGTGAGTATGCTCAACATTTTAATTTGTA
AATGCTGATGGCAAATGTGCTTCTGCCCTGCTCTGGGATCCGAGGATCACCTTATCATTC
TTAAACGGAAGCAAATGAGTAAATGGTCACTTTGTATTTTGTACATTTGACCCAAGTAAT
GTTCTGCATTCTCTCATTTGGCAAAAGCAAATTCACCATCCCCAACAATTAAAAGTCTGT
AGCTTTGCCCAGCTCTGTGGATCTTAATTCATACCCAGCTTGATTGTTTCAACCTCCAAA
TCATTATAGAAGGCTAACGCGGTCTCTATAATATGTCAGTTCTCAGATTAACTTGTTGCT
TGACCCAGAATCATTATTTTCTCTTTCCTTTACTTCAGGTAACCTAAGACTGTAGCTATC
CCGAGAAGCAAGCTTTTTTTTTCCTTTGTTTTTTTTTTAAAGTAACTTTGAAAAAAAAAA
AAAAAGGAATGACATAGCAGCCAAGATAGCAAACAGTCCCAGATCTCAGGGAAAAATTAT
GCTCTAAATATGTACAATTATTGCTTAACAATTGTTTTGCAAAATCCCTGGCTAAATAGA
GACATTCCCTTTCTCCTTCCTCATTTTAAAATGCATTTAGCGGCACAGGGCAAGCTCAGT
AACTTAGAGCTTTGGGTCATTTGTCCAGTGGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGGGGGGAGAAATCACCAGTCTCTGCATTTTTAATTGTTTCTTTAAGCCCA
TCTAAGAAAACTAAGTGCTTGCTCCTTTCCTACAGATCAGATAAATCAGTTATCAAAGTG
AGGCCAAGAACTGGAACAACCACTGAGATGCTTCAAAAAAAACTTAGCAAGACCAAGAAA
CAACTCATCCACTGCCAAGACGACAAATACTCATTTCCACCCAAAAGCTATCATTGAAAG
CTACCCTTTGTGCACTGCACATGGTGTAGGTTGTGAGTATGCTCAACATTTTAATTTGTA
AATGCTGATGGCAAATGTGCTTCTGCCCTGCTCTGGGATCCGAGGATCACCTTATCATTC
TTAAACGGAAGCAAATGAGTAAATGGTCACTTTGTATTTTGTACATTTGACCCAAGTAAT
GTTCTGCATTCTCTCATTTGGCAAAAGCAAATTCACCATCCCCAACAATTAAAAGTCTGT
AGCTTTGCCCAGCTCTGTGGATCTTAATTCATACCCAGCTTGATTGTTTCAACCTCCAAA
TCATTATAGAAGGCTAACGCGGTCTCTATAATATGTCAGTTCTCAGATTAACTTGTTGCT
TGACCCAGAATCATTATTTTCTCTTTCCTTTACTTCAGGTAACCTAAGACTGTAGCTATC
CCGAGAAGCAAGCTTTTTTTTTCCTTTGTTTTTTTTTTAAAGTAACTTTGAAAAAAAAAA
AAAAAGGAATGACATAGCAGCCAAGATAGCAAACAGTCCCAGATCTCAGGGAAAAATTAT
GCTCTAAATATGTACAATTATTGCTTAACAATTGTTTTGCAAAATCCCTGGCTAAATAGA
GACATTCCCTTTCTCCTTCCTCATTTTAAAATGCATTTAGCGGCACAGGGCAAGCTCAGT
AACTTAGAGCTTTGGGTCATTTGTCCAGTGGCTGTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-936, gnl|bosTau2|chr11 (6542429-6543362)
               

               
               12-936, gnl|Hg17|chr2 (104922413-104923333)
               

               
               12-936, gnl|Mm7|chr1 (42929480-42930388)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-936, gnl|bosTau2|chr11 (6542429-6543362)
               

               
               12-936, gnl|Hg17|chr2 (104922413-104923333)
               

               
               12-936, gnl|Mm7|chr1 (42929480-42930388)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	12-936, gnl\|bosTau2\|chr11 (6542429-6543362)
	12-936, gnl\|Hg17\|chr2 (104922413-104923333)
	12-936, gnl\|Mm7\|chr1 (42929480-42930388)