Non-Coding RNA Search

Ss1.1-ruio07_o3.5

Sequence:


               
               TTCCCCGATTCCATATGGCATGTCCGACATTCAGGGTGTCTATAGCTCGATTGGAAATGG
GTCCGGATGAATATGAAGAGATGGAAGAGGAAGAAGAGGAGGAGGAGGACGATGAGGACG
ATGACGATTCAGCAGATATGGACGAGTCCGATGAGGATGACGAGGAGGAGCGGCGGCGGC
GAGTCTTTGATGTTCCCATCCGGAGACGCCGCTGCTCTCGCCTTTTTTAGCAGCCCTGGA
ATGAATCCAGTCCAGTAGATTGCTCAGTAATGTAAATAACGAAACTGTTCTCAGCTTACA
GCAGGAAAGCTAGCATGAAATGGTGTGCCAGGCCCTGGGTTCCATGCGACGCTACCTTAG
GAATTAGATTGTTTGGGTTTGTTTTGTGTGTCTGAGGTCGAGAAGGAAATAGGGATTTTT
TTTTTTTTTTCCTCCTCGTCTAGAAGGCAATGGGAGACGAGGTCTCTAGCTAAGGAACAG
ACATTTGGTTGTTTTGACATATTTTATACTTATAAAAATGTGGACATGGGAGGGAGTTGT
TTGAATAAGGATTGAAAATGAAGCAGAAATACCTACATAAGGATAGACACTGTGTGGCTG
AATAATTCTGTGAAAAGACGTACAGCATAAGTTAGTTAGAAATGAACAGAATTTGTAATT
AGGCTAATCCATGTAGTGGTTCCTATATATTTTGTACTCACAGGGAACTCACTGACGAAA
TAGCTCGAATGCTAGTTGTTCATATCCTTTCTTAGACAATCTATCCTTGAATTTTAGAGT
TTTCATCCCAACAGCCTTGAATTTAAAGTCTGTCAGTATGACTTTGGCCTTGAATTTAAT
CTCCACTTCTACCAACCTTGATTTTGATTTACAATCTTTAACATGACCTTTAATTTAAAG
TCTTCAACACGATGCCCTTTATCATATTGTTCATAGATGCCTCATTTTTGAAATGTGTGT
AAAAGTATGTATTGTGTTGTTTATTAACAAAAGGCCCTTCATGATGTCTCCTGTAGTCTA
AATTTGTAAATACTGCTTCCGTTTTGTTTCTCTTTATATACTTGACTGTCTAACTTTGTG
ATAAGTGACATGAATTTTGTGTTAAGATTAAGTACGTTTTCCTGGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCCGATTCCATATGGCATGTCCGACATTCAGGGTGTCTATAGCTCGATTGGAAATGG
GTCCGGATGAATATGAAGAGATGGAAGAGGAAGAAGAGGAGGAGGAGGACGATGAGGACG
ATGACGATTCAGCAGATATGGACGAGTCCGATGAGGATGACGAGGAGGAGCGGCGGCGGC
GAGTCTTTGATGTTCCCATCCGGAGACGCCGCTGCTCTCGCCTTTTTTAGCAGCCCTGGA
ATGAATCCAGTCCAGTAGATTGCTCAGTAATGTAAATAACGAAACTGTTCTCAGCTTACA
GCAGGAAAGCTAGCATGAAATGGTGTGCCAGGCCCTGGGTTCCATGCGACGCTACCTTAG
GAATTAGATTGTTTGGGTTTGTTTTGTGTGTCTGAGGTCGAGAAGGAAATAGGGATTTTT
TTTTTTTTTTCCTCCTCGTCTAGAAGGCAATGGGAGACGAGGTCTCTAGCTAAGGAACAG
ACATTTGGTTGTTTTGACATATTTTATACTTATAAAAATGTGGACATGGGAGGGAGTTGT
TTGAATAAGGATTGAAAATGAAGCAGAAATACCTACATAAGGATAGACACTGTGTGGCTG
AATAATTCTGTGAAAAGACGTACAGCATAAGTTAGTTAGAAATGAACAGAATTTGTAATT
AGGCTAATCCATGTAGTGGTTCCTATATATTTTGTACTCACAGGGAACTCACTGACGAAA
TAGCTCGAATGCTAGTTGTTCATATCCTTTCTTAGACAATCTATCCTTGAATTTTAGAGT
TTTCATCCCAACAGCCTTGAATTTAAAGTCTGTCAGTATGACTTTGGCCTTGAATTTAAT
CTCCACTTCTACCAACCTTGATTTTGATTTACAATCTTTAACATGACCTTTAATTTAAAG
TCTTCAACACGATGCCCTTTATCATATTGTTCATAGATGCCTCATTTTTGAAATGTGTGT
AAAAGTATGTATTGTGTTGTTTATTAACAAAAGGCCCTTCATGATGTCTCCTGTAGTCTA
AATTTGTAAATACTGCTTCCGTTTTGTTTCTCTTTATATACTTGACTGTCTAACTTTGTG
ATAAGTGACATGAATTTTGTGTTAAGATTAAGTACGTTTTCCTGGAAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               53-892, gnl|bosTau2|chr15 (38633489-38632643)
               

               
               53-892, gnl|Hg17|chr11 (33720207-33719363)
               

               
               53-892, gnl|Mm7|chr2 (103910668-103911522)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-892, gnl|bosTau2|chr15 (38633489-38632643)
               

               
               53-892, gnl|Hg17|chr11 (33720207-33719363)
               

               
               53-892, gnl|Mm7|chr2 (103910668-103911522)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               mga (0.32041)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	53-892, gnl\|bosTau2\|chr15 (38633489-38632643)
	53-892, gnl\|Hg17\|chr11 (33720207-33719363)
	53-892, gnl\|Mm7\|chr2 (103910668-103911522)

	mga (0.32041)
	kid (0.259471)
	aor (0.195274)
	sin (0.174948)
	fco (0.157208)
	fat (0.147427)
	nca (0.136874)
	pla (0.133672)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)