Non-Coding RNA Search

Ss1.1-ruio08_d12.5

Sequence:


               
               CTGTGGGATCACCAGGAGATGAATTTTGTAAGCAGCGCCTTCCTCAACTAAATTCCAAGG
ATAATAAATTTTTGACCTGCACAGAAGAAGATGGGATGCTGGTTTACCACCATGCCCAGG
ATGTCATTTTAGAAGTCATTTACACTGACCCTGTGGATCTTTCTCTAGGCACCGTGGCAG
AAATCACTGGTCATCAGCTCATGAGCTTGTCTACTGCAAATGCAAAGAAAGATCCCAGCT
GCAAAACCTGTAATATCAGTGTTGGACGTTAATGCCCATTTTTCTTATTCTTAGTCCCTT
TTCTTCCCTTAGGAGCTGTTGTCCATTTTCATCACCAGATGTTTTCCAATGAAGCATGCA
CATGCCGCTATCACCAAAAGCAAACTGCCACTTTTCAAATTTCATTCAGAGCTGTTTTAG
TGTTTCCTATTCCCTAACCTTCCCACTACTTTCAGTGATGAAATAGCCTAAGTTGTCCTT
CTGACACTCTCTTGCCTAGATGCTGCAATGTTTTTATTTTTCCTTTATGCCAAACATAAC
AAAACAATTATGTAAACTGCTTTAGCAAAGTACAAGATAATGGTGGCTTATAAATGGTGT
TTAAATATGCACTCATTTTAATCTACTGAACAAATATTGGGATAACTCCAAACCGCATGA
AAGGGTGTAATTGCAGCATGAGTTAAATCTTGAAGCCTAGAATTATCAGCACTTCCAACA
TGTTTGACAGTGTTATTTATGTTATTTATATTAGCTAACAGGAAACAACTACTGTGTTTC
AACATAATAAATATAATAGAAAAATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGGGATCACCAGGAGATGAATTTTGTAAGCAGCGCCTTCCTCAACTAAATTCCAAGG
ATAATAAATTTTTGACCTGCACAGAAGAAGATGGGATGCTGGTTTACCACCATGCCCAGG
ATGTCATTTTAGAAGTCATTTACACTGACCCTGTGGATCTTTCTCTAGGCACCGTGGCAG
AAATCACTGGTCATCAGCTCATGAGCTTGTCTACTGCAAATGCAAAGAAAGATCCCAGCT
GCAAAACCTGTAATATCAGTGTTGGACGTTAATGCCCATTTTTCTTATTCTTAGTCCCTT
TTCTTCCCTTAGGAGCTGTTGTCCATTTTCATCACCAGATGTTTTCCAATGAAGCATGCA
CATGCCGCTATCACCAAAAGCAAACTGCCACTTTTCAAATTTCATTCAGAGCTGTTTTAG
TGTTTCCTATTCCCTAACCTTCCCACTACTTTCAGTGATGAAATAGCCTAAGTTGTCCTT
CTGACACTCTCTTGCCTAGATGCTGCAATGTTTTTATTTTTCCTTTATGCCAAACATAAC
AAAACAATTATGTAAACTGCTTTAGCAAAGTACAAGATAATGGTGGCTTATAAATGGTGT
TTAAATATGCACTCATTTTAATCTACTGAACAAATATTGGGATAACTCCAAACCGCATGA
AAGGGTGTAATTGCAGCATGAGTTAAATCTTGAAGCCTAGAATTATCAGCACTTCCAACA
TGTTTGACAGTGTTATTTATGTTATTTATATTAGCTAACAGGAAACAACTACTGTGTTTC
AACATAATAAATATAATAGAAAAATAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24421243|gb|AAN60800.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24421243|gb|AAN60800.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-806, gnl|bosTau2|chr26 (789242-788436)
               

               
               1-806, gnl|Hg17|chr10 (60675086-60675913)
               

               
               1-806, gnl|Mm7|chr10 (70161733-70160933)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-806, gnl|bosTau2|chr26 (789242-788436)
               

               
               1-806, gnl|Hg17|chr10 (60675086-60675913)
               

               
               1-806, gnl|Mm7|chr10 (70161733-70160933)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fco (0.314416)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)

	1-806, gnl\|bosTau2\|chr26 (789242-788436)
	1-806, gnl\|Hg17\|chr10 (60675086-60675913)
	1-806, gnl\|Mm7\|chr10 (70161733-70160933)

	fco (0.314416)
	ret (0.257467)
	spc (0.226732)
	tes (0.207814)
	fbs (0.175346)
	fhi (0.169578)
	lyg (0.133103)
	kid (0.129735)
	cbr (0.127975)