Non-Coding RNA Search

Ss1.1-ruio08_d13.5

Sequence:


               
               GTCCTGTGGACTCCAAGATGGAGGGTCCAGCTCTGATAGTGACCTGAGTCTGTCTTCAAT
GGTTTTTCTTAACCACAGCAGTGGCTCTGATGATTCAGCTGGAGATGGAGAATATGGCTT
AGACCAGTCCCTTGTTTCTCTAGAGATGTCAGAGGTGCTTCCAGATGAATCAAAAATCAA
TATGTACCGGCTCTACTTTGGAAGCTCCTACGAATCAGAACTTGGGAACGGGACCTCTTC
AGATTTGAGCTCGCAATGCCTGTCAGCACCAAGCTCCATAACTCAGGATTTTCCTGGAGC
TCCTGGGAAGGATCAGTTTTCACGACCTCCAATGTTCAGAACAGCTTCACAAGAGGGTTA
TCAAGAACTCACACAGGAACAAAGAGATCAACTGAGGGCGGATATCAGTATTATCAAAAG
CAGATACCGGAACCAAATTGGAGAGGATGATGCCCTTAACCAACCAGGACCAATCAGAAC
CAGTCTGGCTATTAGTCAGTCACATTTAATGACTGCACTCAGTCACACAAGGCCATCCAT
CAGTGAGGATGACTGGAAGAACTTCGCTGAGCTGTATGAAAATTTTCAAAATCCAAAGAA
GAGAAAAAATCAAAGTGGAACAGTGTTCCGACCTGGACAGAAAGTAACTCTAGCATAAAA
TATACTTCTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTGTGGACTCCAAGATGGAGGGTCCAGCTCTGATAGTGACCTGAGTCTGTCTTCAAT
GGTTTTTCTTAACCACAGCAGTGGCTCTGATGATTCAGCTGGAGATGGAGAATATGGCTT
AGACCAGTCCCTTGTTTCTCTAGAGATGTCAGAGGTGCTTCCAGATGAATCAAAAATCAA
TATGTACCGGCTCTACTTTGGAAGCTCCTACGAATCAGAACTTGGGAACGGGACCTCTTC
AGATTTGAGCTCGCAATGCCTGTCAGCACCAAGCTCCATAACTCAGGATTTTCCTGGAGC
TCCTGGGAAGGATCAGTTTTCACGACCTCCAATGTTCAGAACAGCTTCACAAGAGGGTTA
TCAAGAACTCACACAGGAACAAAGAGATCAACTGAGGGCGGATATCAGTATTATCAAAAG
CAGATACCGGAACCAAATTGGAGAGGATGATGCCCTTAACCAACCAGGACCAATCAGAAC
CAGTCTGGCTATTAGTCAGTCACATTTAATGACTGCACTCAGTCACACAAGGCCATCCAT
CAGTGAGGATGACTGGAAGAACTTCGCTGAGCTGTATGAAAATTTTCAAAATCCAAAGAA
GAGAAAAAATCAAAGTGGAACAGTGTTCCGACCTGGACAGAAAGTAACTCTAGCATAAAA
TATACTTCTGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62088290|dbj|BAD92592.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62088290|dbj|BAD92592.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               443-561, - strand, RNAz p=0.548118

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               443-561, - strand, RNAz p=0.548118

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               17-247, gnl|bosTau2|chr4 (1381879-1381649)
               

               
               17-247, gnl|Hg17|chr7 (91765467-91765237)
               

               
               17-247, gnl|Mm7|chr5 (3639722-3639952)
               


               
               443-581, gnl|bosTau2|chr4 (1378541-1378403)
               

               
               443-581, gnl|Hg17|chr7 (91763388-91763250)
               

               
               443-581, gnl|Mm7|chr5 (3641786-3641924)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-247, gnl|bosTau2|chr4 (1381879-1381649)
               

               
               17-247, gnl|Hg17|chr7 (91765467-91765237)
               

               
               17-247, gnl|Mm7|chr5 (3639722-3639952)
               


               
               443-581, gnl|bosTau2|chr4 (1378541-1378403)
               

               
               443-581, gnl|Hg17|chr7 (91763388-91763250)
               

               
               443-581, gnl|Mm7|chr5 (3641786-3641924)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               kid (0.129735)

	17-247, gnl\|bosTau2\|chr4 (1381879-1381649)
	17-247, gnl\|Hg17\|chr7 (91765467-91765237)
	17-247, gnl\|Mm7\|chr5 (3639722-3639952)

	443-581, gnl\|bosTau2\|chr4 (1378541-1378403)
	443-581, gnl\|Hg17\|chr7 (91763388-91763250)
	443-581, gnl\|Mm7\|chr5 (3641786-3641924)