Non-Coding RNA Search

Ss1.1-ruio08_h9.5

Sequence:


               
               GTTTGCTGGCAGAATCTCGTCAAATGGTCACTGATCTGGAACTGAGCACTCTGCTCCCCA
TCAGCTCTGAGAATCTCAGCACTGGCGCCAAAAACAATGTGGAAGTCTCAGAAGAATCAG
CTGAAAAAAATACCCTTCTCAGTAATTGAAGAAAACAAAAGCCAACCTCAGAATTCATTG
TGATCATGGAAGCTGATTTCTCATCCATGTGGAAGGCAGGAAGCAGACATCAATACCTAA
TACTTAACCTTGCAAACAAAAAGAGGGTTGTAATCCTTCGTAAGCAATATTTAATACCAG
AGAGGAGCAGAAACTGAAAGTTAATTTTCAAACATCTATATTTTGTTTGTTTTCAGGTTA
ACCATTTCCATGTGTAAGACATATTTTTCATGTATAAGAACTTAGCCCTTATTGTATATT
ATGTATAATATACAAACTTGGAATTATGCTAAGAGAGAAAAAGGTTCTCTGTGAAGATGC
AGACGACAGTTAAATACTAGAAAAATCTCTTTAAGAGTATGAGTATCGCATGGAGGATCC
TTGCATAGAAAATGCTGTTTTAACTATCTGATTTTTTTAAGCCTGTGCATACGTTTAAAT
TATAGCCAGTAGCTTTCCAGAGTCGGTTCCAAATACATGAGAAATGGTACTGTCTTGCAG
TTTTACCCCTGAACTTTGCTGTGTAAATAGATTTAAAATGCTATAATACAAAATATGTTT
AACTGAAAACTATCTCCTGGGTTACGGACATTCGAGGTCCTTCTGTTCCAAAAGCTGAGC
AGAGCCCCATCTTGTGTGGGTCAGTAGCAGTCCCATCAATCTATACAAACAAAAGCTTGC
TGGAAGATCAAGTTTTATACAGATTTTTTTTATCATTAAAGACTAAAACATTTCGGCTTT
AACTTATAAAAGTATTTGATTTTTTAAAGGATATACTATGTGCCTCTGTCCCTTCTAAGA
ACTGATCAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGCTGGCAGAATCTCGTCAAATGGTCACTGATCTGGAACTGAGCACTCTGCTCCCCA
TCAGCTCTGAGAATCTCAGCACTGGCGCCAAAAACAATGTGGAAGTCTCAGAAGAATCAG
CTGAAAAAAATACCCTTCTCAGTAATTGAAGAAAACAAAAGCCAACCTCAGAATTCATTG
TGATCATGGAAGCTGATTTCTCATCCATGTGGAAGGCAGGAAGCAGACATCAATACCTAA
TACTTAACCTTGCAAACAAAAAGAGGGTTGTAATCCTTCGTAAGCAATATTTAATACCAG
AGAGGAGCAGAAACTGAAAGTTAATTTTCAAACATCTATATTTTGTTTGTTTTCAGGTTA
ACCATTTCCATGTGTAAGACATATTTTTCATGTATAAGAACTTAGCCCTTATTGTATATT
ATGTATAATATACAAACTTGGAATTATGCTAAGAGAGAAAAAGGTTCTCTGTGAAGATGC
AGACGACAGTTAAATACTAGAAAAATCTCTTTAAGAGTATGAGTATCGCATGGAGGATCC
TTGCATAGAAAATGCTGTTTTAACTATCTGATTTTTTTAAGCCTGTGCATACGTTTAAAT
TATAGCCAGTAGCTTTCCAGAGTCGGTTCCAAATACATGAGAAATGGTACTGTCTTGCAG
TTTTACCCCTGAACTTTGCTGTGTAAATAGATTTAAAATGCTATAATACAAAATATGTTT
AACTGAAAACTATCTCCTGGGTTACGGACATTCGAGGTCCTTCTGTTCCAAAAGCTGAGC
AGAGCCCCATCTTGTGTGGGTCAGTAGCAGTCCCATCAATCTATACAAACAAAAGCTTGC
TGGAAGATCAAGTTTTATACAGATTTTTTTTATCATTAAAGACTAAAACATTTCGGCTTT
AACTTATAAAAGTATTTGATTTTTTAAAGGATATACTATGTGCCTCTGTCCCTTCTAAGA
ACTGATCAGCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               189-950, gnl|bosTau2|chr17 (28273084-28273847)
               

               
               189-950, gnl|Hg17|chr12 (121835842-121836609)
               

               
               189-950, gnl|Mm7|chr5 (123213974-123214726)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-950, gnl|bosTau2|chr17 (28273084-28273847)
               

               
               189-950, gnl|Hg17|chr12 (121835842-121836609)
               

               
               189-950, gnl|Mm7|chr5 (123213974-123214726)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               cte (0.87822)
               

               
               tes (0.415628)
               

               
               spl (0.286369)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               tes (0.415628)
               

               
               spl (0.286369)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

	189-950, gnl\|bosTau2\|chr17 (28273084-28273847)
	189-950, gnl\|Hg17\|chr12 (121835842-121836609)
	189-950, gnl\|Mm7\|chr5 (123213974-123214726)

	cte (0.87822)
	tes (0.415628)
	spl (0.286369)
	pla (0.267344)
	mgp (0.230681)
	aor (0.195274)
	isp (0.150376)
	kid (0.129735)
	ecc (0.115035)