Ss1.1-ruio08_o15.5
|
CCGCAGCGGCAGCGGCGGGTGCAGCCTGCGGAGAGCCAGGCAGGGGACACTGATCGGCAG
GAGAGGACGCAAGAGCGCACGCGGCAATCACCCATCTTCAATCCCCGCAGCAGCTGCTGA
CCCGCCACCATGGCCCGCGGAAAAGCCAAGGAGGAGGGCAGCTGGAAGAAATTCATCTGG
AACTCCGAAAAGAAGGAGTTTTTGGGCAGGACCGGTGGCAGTTGGTTTAAGATCCTTCTA
TTCTACGTTATATTTTATGGCTGCCTGGCTGGCATCTTCATTGGAACCATCCAAGTGATG
CTGCTCACCATCAGTGAATTTAAGCCCACATATCAGGACCGAGTGGCCCCACCAGGATTA
ACACAGATTCCTCAGAGCCAAAAGACTGAAATTTCTTTTCGTCCTAATGATCCCCAAAGC
TATGAATCCTATGTGGTAAGCATAGTGAGGTTCCTGGAGAAGTACAAAGATTTGGCGCAG
AAGGATGATATGATTTTTGAAGATTGTGGCAATGTGCCCAGCGAACTCAAAGAACGAGGA
GAATATAACAACGAACGAGGAGAGCGAAAAGTGTGCAGGTTCAGGCTCGAATGGTTGGGA
AACTGCTCTGGATTAAATGATGAAACCTATGGCTACAAAGATGGCAAACCCTGTGTCATT
ATAAAGCTCAACCGAGTTCTGGGCTTCAAACCTAAGCCTCCCAAGAATGAGTCCTTGGAG
ACTTACCCAGTGATGAAGTATAATCCATATGTCCTGCCCGTTCATTGCACTGGCAAGCGT
GACGAAGATAAGGAGAAAGTTGGAACCATGGAGTATTTTGGCCTGGGCGGCTACCCTGGT
TTTCCTCTACAGTATTACCCTTACTACGGCAAGCTCCTGCAGCCCAAGTACCTGCAGCCC
CTGATGGCTGTGCAGTTCACCAACCTCACCATGGACACTGAAATCCGCATAGAGTGTAAG
GCGTATGGTGAGAACATTGGGTACAGTGAGAAAGACCGTTTTCAGGGACGCTTTGATGTA
AAAATTGAAGTTAAGAGCTGATCACAAGCTCTTTCCCACTAGCCATTTAAAGAGTTTAAA
AAGATTCAGAAACAAAAAACCTACTAGTCTTGAACAAACTGTCATACGTATGGGACCTAC
ACTTAATCTATATGCTTTACACTAGCTTTCTGCATTTAATAGGTTAGAATGTAAATTTAA
AGTGTAGCAATAGCAACAAAATATTTATTCTACTGTAAATGACAAAAGAAAAATAAAAAT
CGAGCCTTGGGACGTGCCCATTTTTACTGTAAATTATGATTCCATAACTGACTTGTAGTA
AGCAGTGTTTCTGGCCCCTAAGTATTGCTGCCTTGTGTATTTTATTTAGTGTACAGTACT
ATAGGTGCACACTTTGGTCATTTTTCAAGCCATGTTTTATCGTATCTGTTTTCTACTTTA
TGTGAGCAAGGTTTGCTGTCCAAGGTGTAAATATTCAATGGGAATAAAACTGGCATGGTA
CTTTTTTTTTTTTCTTTTTGAGTTTGGCTCTTTCAAAAATAATGGCCCATCAATGAGCAT
TTTTAACACACTCCATATAGTCTTTTCCTGTGGTGTTAGGTCTTCATTATTTTCTTTTTT
CCTGGGTCTAGGTGGGGGGGGGTGGGCTGGGCTGTCATGGGGGAACTGCCCTTTAAATTT
TAAGTGACACTACAGAAAATCTCAAAAAGGTGATGGGTTGTGTTGTGCTTTGTACTGAAT
GCTGTCTTGACTTCTTTTCCCCTGTCCTCCAGTCCGTTCGAAGCTGTGTATGAGATCTGG
AGCACCCGTCACTTTGGCTAGTGATAGGGTGGATTAATTTGCTTTGTACATTTTCTTTCA
CTTTCCTTTTTTCCTTTCTCTGGAGGCATCACATGCTGGTGCTGTGTCTTTATGAATGTT
TTAACCATTTTCATGGTGGAAGAATTTTATATTTATGCAGTTGTACAATTTTATTTTTTT
CTGCAAGAAAAAGTGTAATGTATGAAATAAACCAAAGTCACTTGTTTGAAAAAAAAAAAA
ATCTTTATTTTGGACTTTATAAAAAGCAATGCAGTACCCCATAGACTGGTGTTAAATGTT
GTCTACAGTGCAAAATCCATGTTCTAACATATGTCATAATTGCCAGGAGTACAGTGCTCT
TGTTGATCTTGTATTCAGTCAGGTTAAAACAATGGACAATAAAAGAATGAACACAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGCAGCGGCAGCGGCGGGTGCAGCCTGCGGAGAGCCAGGCAGGGGACACTGATCGGCAG
GAGAGGACGCAAGAGCGCACGCGGCAATCACCCATCTTCAATCCCCGCAGCAGCTGCTGA
CCCGCCACCATGGCCCGCGGAAAAGCCAAGGAGGAGGGCAGCTGGAAGAAATTCATCTGG
AACTCCGAAAAGAAGGAGTTTTTGGGCAGGACCGGTGGCAGTTGGTTTAAGATCCTTCTA
TTCTACGTTATATTTTATGGCTGCCTGGCTGGCATCTTCATTGGAACCATCCAAGTGATG
CTGCTCACCATCAGTGAATTTAAGCCCACATATCAGGACCGAGTGGCCCCACCAGGATTA
ACACAGATTCCTCAGAGCCAAAAGACTGAAATTTCTTTTCGTCCTAATGATCCCCAAAGC
TATGAATCCTATGTGGTAAGCATAGTGAGGTTCCTGGAGAAGTACAAAGATTTGGCGCAG
AAGGATGATATGATTTTTGAAGATTGTGGCAATGTGCCCAGCGAACTCAAAGAACGAGGA
GAATATAACAACGAACGAGGAGAGCGAAAAGTGTGCAGGTTCAGGCTCGAATGGTTGGGA
AACTGCTCTGGATTAAATGATGAAACCTATGGCTACAAAGATGGCAAACCCTGTGTCATT
ATAAAGCTCAACCGAGTTCTGGGCTTCAAACCTAAGCCTCCCAAGAATGAGTCCTTGGAG
ACTTACCCAGTGATGAAGTATAATCCATATGTCCTGCCCGTTCATTGCACTGGCAAGCGT
GACGAAGATAAGGAGAAAGTTGGAACCATGGAGTATTTTGGCCTGGGCGGCTACCCTGGT
TTTCCTCTACAGTATTACCCTTACTACGGCAAGCTCCTGCAGCCCAAGTACCTGCAGCCC
CTGATGGCTGTGCAGTTCACCAACCTCACCATGGACACTGAAATCCGCATAGAGTGTAAG
GCGTATGGTGAGAACATTGGGTACAGTGAGAAAGACCGTTTTCAGGGACGCTTTGATGTA
AAAATTGAAGTTAAGAGCTGATCACAAGCTCTTTCCCACTAGCCATTTAAAGAGTTTAAA
AAGATTCAGAAACAAAAAACCTACTAGTCTTGAACAAACTGTCATACGTATGGGACCTAC
ACTTAATCTATATGCTTTACACTAGCTTTCTGCATTTAATAGGTTAGAATGTAAATTTAA
AGTGTAGCAATAGCAACAAAATATTTATTCTACTGTAAATGACAAAAGAAAAATAAAAAT
CGAGCCTTGGGACGTGCCCATTTTTACTGTAAATTATGATTCCATAACTGACTTGTAGTA
AGCAGTGTTTCTGGCCCCTAAGTATTGCTGCCTTGTGTATTTTATTTAGTGTACAGTACT
ATAGGTGCACACTTTGGTCATTTTTCAAGCCATGTTTTATCGTATCTGTTTTCTACTTTA
TGTGAGCAAGGTTTGCTGTCCAAGGTGTAAATATTCAATGGGAATAAAACTGGCATGGTA
CTTTTTTTTTTTTCTTTTTGAGTTTGGCTCTTTCAAAAATAATGGCCCATCAATGAGCAT
TTTTAACACACTCCATATAGTCTTTTCCTGTGGTGTTAGGTCTTCATTATTTTCTTTTTT
CCTGGGTCTAGGTGGGGGGGGGTGGGCTGGGCTGTCATGGGGGAACTGCCCTTTAAATTT
TAAGTGACACTACAGAAAATCTCAAAAAGGTGATGGGTTGTGTTGTGCTTTGTACTGAAT
GCTGTCTTGACTTCTTTTCCCCTGTCCTCCAGTCCGTTCGAAGCTGTGTATGAGATCTGG
AGCACCCGTCACTTTGGCTAGTGATAGGGTGGATTAATTTGCTTTGTACATTTTCTTTCA
CTTTCCTTTTTTCCTTTCTCTGGAGGCATCACATGCTGGTGCTGTGTCTTTATGAATGTT
TTAACCATTTTCATGGTGGAAGAATTTTATATTTATGCAGTTGTACAATTTTATTTTTTT
CTGCAAGAAAAAGTGTAATGTATGAAATAAACCAAAGTCACTTGTTTGAAAAAAAAAAAA
ATCTTTATTTTGGACTTTATAAAAAGCAATGCAGTACCCCATAGACTGGTGTTAAATGTT
GTCTACAGTGCAAAATCCATGTTCTAACATATGTCATAATTGCCAGGAGTACAGTGCTCT
TGTTGATCTTGTATTCAGTCAGGTTAAAACAATGGACAATAAAAGAATGAACACAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-231, gnl|bosTau2|chr16 (22892837-22893070) |
|
1-231, gnl|Hg17|chr1 (165807596-165807827) |
|
1-231, gnl|Mm7|chr1 (164423653-164423414) |
| |
|
354-511, gnl|bosTau2|chr16 (22910282-22910439) |
|
354-511, gnl|Hg17|chr1 (165825778-165825935) |
|
354-511, gnl|Mm7|chr1 (164409086-164408929) |
| |
|
514-696, gnl|bosTau2|chr16 (22912171-22912353) |
|
514-696, gnl|Hg17|chr1 (165828122-165828304) |
|
514-696, gnl|Mm7|chr1 (164407367-164407185) |
| |
|
776-2215, gnl|bosTau2|chr16 (22916935-22918358) |
|
776-2215, gnl|Hg17|chr1 (165832186-165833615) |
|
776-2215, gnl|Mm7|chr1 (164404269-164402840) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-231, gnl|bosTau2|chr16 (22892837-22893070) |
|
1-231, gnl|Hg17|chr1 (165807596-165807827) |
|
1-231, gnl|Mm7|chr1 (164423653-164423414) |
| |
|
354-511, gnl|bosTau2|chr16 (22910282-22910439) |
|
354-511, gnl|Hg17|chr1 (165825778-165825935) |
|
354-511, gnl|Mm7|chr1 (164409086-164408929) |
| |
|
514-696, gnl|bosTau2|chr16 (22912171-22912353) |
|
514-696, gnl|Hg17|chr1 (165828122-165828304) |
|
514-696, gnl|Mm7|chr1 (164407367-164407185) |
| |
|
776-2215, gnl|bosTau2|chr16 (22916935-22918358) |
|
776-2215, gnl|Hg17|chr1 (165832186-165833615) |
|
776-2215, gnl|Mm7|chr1 (164404269-164402840) |
|
pro (9.72862) |
|
fco (2.98695) |
|
sag (2.92344) |
|
kid (1.94603) |
|
cbe (1.91388) |
|
spc (1.81385) |
|
rec (1.55763) |
|
cki (1.48711) |
|
vin (1.33023) |
|
fbs (1.22742) |
|
cmu (0.931966) |
|
sin (0.874738) |
|
fhi (0.847889) |
|
nje (0.8296) |
|
cje (0.826173) |
|
hyp (0.714184) |
|
ill (0.702371) |
|
lyg (0.665513) |
|
mas (0.630915) |
|
jej (0.593531) |
|
fcc (0.593354) |
|
ldo (0.582016) |
|
cst (0.560146) |
|
ssp (0.542079) |
|
nmm (0.531209) |
|
bfe (0.449573) |
|
ski (0.440205) |
|
nms (0.427716) |
|
amn (0.417711) |
|
col (0.390016) |
|
pgl (0.35545) |
|
gul (0.355177) |
|
ton (0.351) |
|
duo (0.345602) |
|
nco (0.323468) |
|
isp (0.300752) |
|
eje (0.296501) |
|
lin (0.291206) |
|
pty (0.285429) |
|
pla (0.267344) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
tes (0.207814) |
|
hea (0.204499) |
|
fli (0.202881) |
|
aor (0.195274) |
|
nep (0.183925) |
|
sto (0.179824) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
eli (0.151814) |
|
lun (0.150489) |
|
fat (0.147427) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ste (0.135208) |
|
ova (0.129132) |
|
ret (0.128733) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
pro (9.72862) |
|
fco (2.98695) |
|
sag (2.92344) |
|
kid (1.94603) |
|
cbe (1.91388) |
|
spc (1.81385) |
|
rec (1.55763) |
|
cki (1.48711) |
|
vin (1.33023) |
|
fbs (1.22742) |
|
cmu (0.931966) |
|
sin (0.874738) |
|
fhi (0.847889) |
|
nje (0.8296) |
|
cje (0.826173) |
|
hyp (0.714184) |
|
ill (0.702371) |
|
lyg (0.665513) |
|
mas (0.630915) |
|
jej (0.593531) |
|
fcc (0.593354) |
|
ldo (0.582016) |
|
cst (0.560146) |
|
ssp (0.542079) |
|
nmm (0.531209) |
|
bfe (0.449573) |
|
ski (0.440205) |
|
nms (0.427716) |
|
amn (0.417711) |
|
col (0.390016) |
|
pgl (0.35545) |
|
gul (0.355177) |
|
ton (0.351) |
|
duo (0.345602) |
|
nco (0.323468) |
|
isp (0.300752) |
|
eje (0.296501) |
|
lin (0.291206) |
|
pty (0.285429) |
|
pla (0.267344) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
tes (0.207814) |
|
hea (0.204499) |
|
fli (0.202881) |
|
aor (0.195274) |
|
nep (0.183925) |
|
sto (0.179824) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
eli (0.151814) |
|
lun (0.150489) |
|
fat (0.147427) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ste (0.135208) |
|
ova (0.129132) |
|
ret (0.128733) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
cty (0.10408) |
