Non-Coding RNA Search

Ss1.1-ruio09_c11.5

Sequence:


               
               ATATTGCTCTTCAGTCGACAAGGGAAATTACGGCTGCAGAAATGGTACACGACTCTCCCT
GACAAGGAAAGGAAAAAGATCACCCGGGAAATTGTTCAGATTATTCTGTCTCGTGGTCAG
AGGACAAGCAGTTTTATTGACTGGAAGGAGCTAAAACTTGTTTATAAAAGGTGTATGCTA
GTTTATATTTTTGCTGTGCCGTAGAAAATCAGGACAATGAGCTCTTAACACTAGAGATTG
TGCATCGTTACGTGGAGTTGCTGGACAAATACTTTGGAAATGTCTGCGAACTGGATATTA
TCTTTAATTTTGAAAAGGCTTATTTTATCCTGGATGAATTTATAATGGGTGGAGAAATTC
AAGAAACATCCAAGAAATCTGCTGTCAAAGCTATTGAGGATTCTGATATGTTACAGGAGA
CAATGGAAGAATACATGAACAAGCCTGCATTTTAACCATACAACTACTTGAAGACTCCAA
GTGCTACATGTTGCGAACTTGTAAATAAGCAGTGCCTTGCATGGAGTTATTTGACAGAGC
CTCTGGCACCATGCCAAAAATAACTTAAAAGGGATTTTTTTGTTACCTAGTAAAAATTAA
AGTTGTTAACATAATATATTTATCATTATTACATGTCTGTATTATACTGTATATGACTAT
TTCAAAGTTAAAATAACTGCTTTCATAACTCAATAGACTGAATATTTGTTAGCAGTGTTT
TAACTCCAAGTCACATTTTGGAGCTACTTTAAAATTTGTTGCAATATGTTTGATCTGCTA
CTGATAGGATGAAAAAAATGTCTTGTAATAATCCATGATTTTGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTGCTCTTCAGTCGACAAGGGAAATTACGGCTGCAGAAATGGTACACGACTCTCCCT
GACAAGGAAAGGAAAAAGATCACCCGGGAAATTGTTCAGATTATTCTGTCTCGTGGTCAG
AGGACAAGCAGTTTTATTGACTGGAAGGAGCTAAAACTTGTTTATAAAAGGTGTATGCTA
GTTTATATTTTTGCTGTGCCGTAGAAAATCAGGACAATGAGCTCTTAACACTAGAGATTG
TGCATCGTTACGTGGAGTTGCTGGACAAATACTTTGGAAATGTCTGCGAACTGGATATTA
TCTTTAATTTTGAAAAGGCTTATTTTATCCTGGATGAATTTATAATGGGTGGAGAAATTC
AAGAAACATCCAAGAAATCTGCTGTCAAAGCTATTGAGGATTCTGATATGTTACAGGAGA
CAATGGAAGAATACATGAACAAGCCTGCATTTTAACCATACAACTACTTGAAGACTCCAA
GTGCTACATGTTGCGAACTTGTAAATAAGCAGTGCCTTGCATGGAGTTATTTGACAGAGC
CTCTGGCACCATGCCAAAAATAACTTAAAAGGGATTTTTTTGTTACCTAGTAAAAATTAA
AGTTGTTAACATAATATATTTATCATTATTACATGTCTGTATTATACTGTATATGACTAT
TTCAAAGTTAAAATAACTGCTTTCATAACTCAATAGACTGAATATTTGTTAGCAGTGTTT
TAACTCCAAGTCACATTTTGGAGCTACTTTAAAATTTGTTGCAATATGTTTGATCTGCTA
CTGATAGGATGAAAAAAATGTCTTGTAATAATCCATGATTTTGAAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51858832|gb|AAH81385.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51858832|gb|AAH81385.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-174, gnl|bosTau2|chr2 (68050713-68050540)
               

               
               1-174, gnl|Hg17|chr2 (224468082-224467909)
               

               
               1-174, gnl|Mm7|chr1 (79846014-79845841)
               


               
               5-173, gnl|bosTau2|chr25 (32783833-32784001)
               

               
               5-173, gnl|Hg17|chr7 (100393323-100393491)
               

               
               5-173, gnl|Mm7|chr5 (136014139-136013971)
               


               
               418-822, gnl|bosTau2|chr2 (68034006-68033605)
               

               
               418-822, gnl|Hg17|chr2 (224448974-224448564)
               

               
               418-822, gnl|Mm7|chr1 (79829942-79829525)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-174, gnl|bosTau2|chr2 (68050713-68050540)
               

               
               1-174, gnl|Hg17|chr2 (224468082-224467909)
               

               
               1-174, gnl|Mm7|chr1 (79846014-79845841)
               


               
               5-173, gnl|bosTau2|chr25 (32783833-32784001)
               

               
               5-173, gnl|Hg17|chr7 (100393323-100393491)
               

               
               5-173, gnl|Mm7|chr5 (136014139-136013971)
               


               
               418-822, gnl|bosTau2|chr2 (68034006-68033605)
               

               
               418-822, gnl|Hg17|chr2 (224448974-224448564)
               

               
               418-822, gnl|Mm7|chr1 (79829942-79829525)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lin (0.145603)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

	1-174, gnl\|bosTau2\|chr2 (68050713-68050540)
	1-174, gnl\|Hg17\|chr2 (224468082-224467909)
	1-174, gnl\|Mm7\|chr1 (79846014-79845841)

	5-173, gnl\|bosTau2\|chr25 (32783833-32784001)
	5-173, gnl\|Hg17\|chr7 (100393323-100393491)
	5-173, gnl\|Mm7\|chr5 (136014139-136013971)

	418-822, gnl\|bosTau2\|chr2 (68034006-68033605)
	418-822, gnl\|Hg17\|chr2 (224448974-224448564)
	418-822, gnl\|Mm7\|chr1 (79829942-79829525)