Non-Coding RNA Search

Ss1.1-ruio09_c16.5

Sequence:


               
               GGAAAGAATAGATTCAGAGGAAGACAACGTAAATGGACACCAATGCTAATGAGGAATTCA
TACGTCCTCTTAAGGATGATGATTCCAGAAAGGTTATAAGCCTAACACAGCTGCTACAAT
CCTCTGGTGAGGAACCAGCTCTTTGCTGTGAAACGGGGTGGGGTCAGGGGGATATTCTGA
AGACAATTCCTCAAGCCAAGTTCAATTATTAAAGTGCTTCCAAATAAAACCAGCTCACTA
AGAACACGGGAGGACTTCAGTGTAAAGACTGGGGTCAACATTCAGAGGGGACTCTGCTGC
AGTTAGAAAAAGCTGATTCTGACTTTTATACTCAAATGCTGACCCAGAGAAACCTGATGG
GCACTGGCTCTCTAGCTGAGGATGAGCTCTAGATAGAAATGAGAACCTTCAACTTGAAAA
TCAAAGAGGGTGAAACCACTGTGGAAAACAGTATGGAGATGCCTCAGAAAACTAAAAATA
GAACTCCCATTTGATCCAGCAATCCCACTCCTGGGCATCTATCCAGAGAAAACCATGACT
TGCAAAGACACATGTACTCCAATGTTCCCTGTAGCACTCTTTACAATAGCCAAGACATGG
AAACAACCTAAATGTCCATTGACAGAGGAGTGGATCAAGAAGATGTGGTACATACACACA
TGGAATATTACTCAGCCATTAAAAAGAACGAAATACCAGCACTTTTTGGAACATGGATGG
ACCTAGAAATTATCATACTAAGTGAAGTCAGCCATACAATGAGACACCAACATCAAACAC
TTTCACTGACATATGGAATCTGAAAAAAGGACAGACTGAACCTCTTTGCAGAACAGACGC
TGACTCACAGACATTAAAAAACTTTTTGTCTTTTTTGTCTTTTGTCTTGGTGGGGGTGTG
TGCTTGGATTATGGGATAGAAATCCTGTGAAACTGGATTGTGATGATCATTATACAACTA
CAGATGTGATAAAAATCATTTGAGTAATTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGAATAGATTCAGAGGAAGACAACGTAAATGGACACCAATGCTAATGAGGAATTCA
TACGTCCTCTTAAGGATGATGATTCCAGAAAGGTTATAAGCCTAACACAGCTGCTACAAT
CCTCTGGTGAGGAACCAGCTCTTTGCTGTGAAACGGGGTGGGGTCAGGGGGATATTCTGA
AGACAATTCCTCAAGCCAAGTTCAATTATTAAAGTGCTTCCAAATAAAACCAGCTCACTA
AGAACACGGGAGGACTTCAGTGTAAAGACTGGGGTCAACATTCAGAGGGGACTCTGCTGC
AGTTAGAAAAAGCTGATTCTGACTTTTATACTCAAATGCTGACCCAGAGAAACCTGATGG
GCACTGGCTCTCTAGCTGAGGATGAGCTCTAGATAGAAATGAGAACCTTCAACTTGAAAA
TCAAAGAGGGTGAAACCACTGTGGAAAACAGTATGGAGATGCCTCAGAAAACTAAAAATA
GAACTCCCATTTGATCCAGCAATCCCACTCCTGGGCATCTATCCAGAGAAAACCATGACT
TGCAAAGACACATGTACTCCAATGTTCCCTGTAGCACTCTTTACAATAGCCAAGACATGG
AAACAACCTAAATGTCCATTGACAGAGGAGTGGATCAAGAAGATGTGGTACATACACACA
TGGAATATTACTCAGCCATTAAAAAGAACGAAATACCAGCACTTTTTGGAACATGGATGG
ACCTAGAAATTATCATACTAAGTGAAGTCAGCCATACAATGAGACACCAACATCAAACAC
TTTCACTGACATATGGAATCTGAAAAAAGGACAGACTGAACCTCTTTGCAGAACAGACGC
TGACTCACAGACATTAAAAAACTTTTTGTCTTTTTTGTCTTTTGTCTTGGTGGGGGTGTG
TGCTTGGATTATGGGATAGAAATCCTGTGAAACTGGATTGTGATGATCATTATACAACTA
CAGATGTGATAAAAATCATTTGAGTAATTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34865460|ref|XP_343448.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34865460|ref|XP_343448.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               468-587, - strand, RNAz p=0.618638

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               468-587, - strand, RNAz p=0.618638

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               397-871, gnl|bosTau2|chr10 (30720495-30720974)
               


               
               415-870, gnl|bosTau2|chr10 (15927132-15926672)
               


               
               419-869, gnl|bosTau2|chr10 (6719380-6719822)
               


               
               429-861, gnl|bosTau2|chr10 (38941925-38942347)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               397-871, gnl|bosTau2|chr10 (30720495-30720974)
               


               
               415-870, gnl|bosTau2|chr10 (15927132-15926672)
               


               
               419-869, gnl|bosTau2|chr10 (6719380-6719822)
               


               
               429-861, gnl|bosTau2|chr10 (38941925-38942347)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

	397-871, gnl\|bosTau2\|chr10 (30720495-30720974)

	415-870, gnl\|bosTau2\|chr10 (15927132-15926672)

	419-869, gnl\|bosTau2\|chr10 (6719380-6719822)

	429-861, gnl\|bosTau2\|chr10 (38941925-38942347)