Non-Coding RNA Search

Ss1.1-ruio09_g19.5

Sequence:


               
               TTTATCTTTTCACCTGTGTAAGTTATCTATTGCTATTTAATAGATTACCCCCAATTAAAA
ATCTTAAAAGAGCAAGCATTATCAGTCAGTTTCTGTGGTTAGGAGCTGGGAAACAGCCTA
GCCTGGTGGTTCTGACACAAAGTCATAGGAAGTTGTAGTCAAGAGTCCTCAGGGCCTGCA
GTCACCTAGGGCTTAAGAATCCACTTCTGAGCTCTCTGACAGTCTCTGAAAGCACACGCC
AGCACTCCTTCCTCATCCTGTCCCTTAACAACAAGCCACTACGCCCATCCTGCACTCGGG
GAGGGGACTACCCCTGCCCTGATGAATGGAGCAGGACCAAAGCATTTGTGGTAGTACCTT
AAAACGCCTCACCTCCAACAGAGGGCGAACCCAGGTCAGGAGGGGGTAGCTTTAAATTAG
ATGACGTACTGAGAGAGGTACTGTTACTGAAGACAGTTCTCTAAGACATGAGTTGAAAAA
CATAAAAAACAGACTCTCTCCTCACGGCCACCTGCCAGTTATGAGGGGGTGGCAAGAAAT
GGCAATCCCCAGGAGAATATATCTATACGTTTGCCTGATGTATACTACCAGCAACCCAAG
GATGCATTGCAAGTCCTTGTTCTGGTATCTCTAAGACTCGGTACCACTTCCTTACTGTCC
CCTCAGCCAGGTGTTGACAGAGGGAATTGGATTCTTCTAATTGAGCCACTCCAGTGGACT
TCACTGGAGTTAGGGTTGTTAAGCAAAGGGAGCAAACATGAATTAGCTCTAGGGTTATTG
GGCTAAAGAAAAGCTAACTGTTCAGATTCAGGGTGATGGGGCTCACAGCATCTGAAAGCC
AGGTCCCCATGAGAGTCAATCCTTGGCATCTGCTCGAAAACCACACCGGTTGAAGCAGAC
TTGGGTTGGGTCTCTCACCCGAGAAGCCACTTCTTTCTTAATAAGAATGGAACATCTGGG
AAGTAGAATGTCTGCTTGATTCTTTAAATCCAGTGTGCAGCTTAACTCTTCATGCCCTCC
TCATCCTGGCCTTCGTGATGGAAATGGGTTCTTAAAGAGCACCAGTCCTGTCTTCACGCT
CAAGGGAAACTCAGATGAGGCTCGTCAGTTCAACACATTCTTAGTGAATGTCTGCTGTTT
CTGGCACCCACGCCCAACCAAGTTTATTAAGTTTCCAGACATCTTAAGAATGCAAATTCT
TGTTTGGATTTATGTTCCGCCTCTTCCCCACATTTTCTTATCTATAGCCCTGCTTTCTTT
AAAGAGTATACTTGAATGAGAAAGCATTGCTGCTGAGGCAGCTATTTTTAAAAAGGTACT
TCTTCCAGGAGTAAGGAACTTATCTTTAAAGCACCTTCAAATGAAATTTTTCCTTCCGAT
ATTGAGATGGAGTCAAAATAAATGGTCTTTGTTTATGCTGTTTGAGTTACCAGCTCTTTG
GGTCTCTCAGACTTCACTCCCCAGTTCAGATAGTTCCTGCTAGAGGTGTAGGCTCCACTC
AGAGGCCATTGCACAGCCAGTACACGTTGACTGCCTGCTTGGATCAAGACACCTCATGTA
AGGTGCTCATAAAGTGCTCATCGTGTTGGCAGCAGTATCCCAGAAACAATTTTTCCCTCC
TCCTCACCTTGGAGGTGTGATGAGGTGTCAAGTGTCTTGGCTGCTTGAAGCTAGGGGCCC
TCAGCCCTCTGCACTCCCTTCTAGACAGGAGGCCCATTGCTTTGCTCTCTGGGTCAGAAT
TTCCCCTTCTCGGCATGTTTCTGGACCACATGCCTGTGGACAGCTATTTATTAACCGCGA
AACCCAATCTCTTACCAACCCATGACGTCTGGTGGGGGATAGTATTTGTTTTAAAGAAGC
ATTGTTTCTTTGGGGAGGGGGCAAACTTCTGTCTGGACTTTGAAGGGGACATAGTTACCA
TTCATTACCACCTACCCCCCAACAACTCTTTTCTTTACCTCTCAGCTTTTAATAAAAGAT
GACATCAGATCTTGAGGCAATTGGGTCACAATATTTTAGAATGCTTATTCCCCAGGGCAT
TTTCTGTTCTAGTCATATTTTTCCAGTCGAGTAATAGAGTTTCTGAGACTAGCTCACCGA
CGGCGAGGCTAGGGTGATTGATACAGTCATTCGTGTCACCTTTCCCACCCCCCGGAATTA
ATGTTTCTCTCTCTGGACTGGTCTTGGAAGTTGATACCTTTTGGCAAAGCTTAGCTTTAG
GAGAAGTCTTTCAAGCCCTGTTCAGTCGATCTGTGGTTTCTCCTTGCTTCCTCTGCCAGC
AGCCCTGGCCAGCCACACTGTGTGGATCCCAAGTGGAAAACAGCAGAGATGAAACACATT
CCTGGGGTATTTAAACTCTCACTCTGCCACCTTTCCAAGAGTGGGAGGCTGGCAGGGAGA
TGCTGCAATGCTTGATAATCATTTGGCCACATTGAAATTTCCAAAGGGAGCTTTTGCTGG
TGCTTAAAACCAAAATTCCTGGACATGTAAGATTGAATGAATCTAGCACAAAATATCCAT
TCTTGCCCCAGTGTACCCCCTTCCTCTCTGTCTTAAGCTTAAAAAAAAAAGAAAAAGAAA
AAGAAAAAGCCCAGGCCAAGGGTAATTTTTACTTGAAACCAGGAGAGTGGGGGAGGAACA
CTAGAGATGAGGGGCGAGCTGTGCAGGGAGTCATCCTGCTCCTGGTGTCTGTTCCAGTCA
CTGAGGACTGTCAGCCAGTGCCTTTCCTTCGCCTGGAGATGGAGCCCATCTCTTTCCACT
GGGTGAGGAGACCCTTTCTAACCAGGGGTGACCCTTAAAGAGGGTGTCTGGGAGAGCCCA
GAGGACACTCACATATTTGGGTGTCTATTTTAAGCATCCTTAAAATATTTTATATATTAA
AAAAAACAAAAAACAAAAAAAACGCTCTTCCCTGTCTTTGTGCCACCAGTGGCCCAGTTC
CATCCACTCTGAATGGAAAAGCGGAGACTGCCAGTACTTTTCTTGGTCTTCCCTTGGTCT
CTTGCTGCGGGTGTCCCATTCCCCCTCCTGTCCATCTCCCTGTGGTGGATGGAGAGCTGA
GGACACCATGCAGTCCTGAGGCAGTCCTATGTGACTCCAGGATCAGGTTTTTGTTTTTTG
TCTTTTCTAACTGTCCTTCCAAACCAGCAAGTGTTTGGAAACTAGGGGAAAAAATTAAAT
TCTCACCAATGGTTGCTGTTACAGTTAAATCAATAAAGATCTTGAGTGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATCTTTTCACCTGTGTAAGTTATCTATTGCTATTTAATAGATTACCCCCAATTAAAA
ATCTTAAAAGAGCAAGCATTATCAGTCAGTTTCTGTGGTTAGGAGCTGGGAAACAGCCTA
GCCTGGTGGTTCTGACACAAAGTCATAGGAAGTTGTAGTCAAGAGTCCTCAGGGCCTGCA
GTCACCTAGGGCTTAAGAATCCACTTCTGAGCTCTCTGACAGTCTCTGAAAGCACACGCC
AGCACTCCTTCCTCATCCTGTCCCTTAACAACAAGCCACTACGCCCATCCTGCACTCGGG
GAGGGGACTACCCCTGCCCTGATGAATGGAGCAGGACCAAAGCATTTGTGGTAGTACCTT
AAAACGCCTCACCTCCAACAGAGGGCGAACCCAGGTCAGGAGGGGGTAGCTTTAAATTAG
ATGACGTACTGAGAGAGGTACTGTTACTGAAGACAGTTCTCTAAGACATGAGTTGAAAAA
CATAAAAAACAGACTCTCTCCTCACGGCCACCTGCCAGTTATGAGGGGGTGGCAAGAAAT
GGCAATCCCCAGGAGAATATATCTATACGTTTGCCTGATGTATACTACCAGCAACCCAAG
GATGCATTGCAAGTCCTTGTTCTGGTATCTCTAAGACTCGGTACCACTTCCTTACTGTCC
CCTCAGCCAGGTGTTGACAGAGGGAATTGGATTCTTCTAATTGAGCCACTCCAGTGGACT
TCACTGGAGTTAGGGTTGTTAAGCAAAGGGAGCAAACATGAATTAGCTCTAGGGTTATTG
GGCTAAAGAAAAGCTAACTGTTCAGATTCAGGGTGATGGGGCTCACAGCATCTGAAAGCC
AGGTCCCCATGAGAGTCAATCCTTGGCATCTGCTCGAAAACCACACCGGTTGAAGCAGAC
TTGGGTTGGGTCTCTCACCCGAGAAGCCACTTCTTTCTTAATAAGAATGGAACATCTGGG
AAGTAGAATGTCTGCTTGATTCTTTAAATCCAGTGTGCAGCTTAACTCTTCATGCCCTCC
TCATCCTGGCCTTCGTGATGGAAATGGGTTCTTAAAGAGCACCAGTCCTGTCTTCACGCT
CAAGGGAAACTCAGATGAGGCTCGTCAGTTCAACACATTCTTAGTGAATGTCTGCTGTTT
CTGGCACCCACGCCCAACCAAGTTTATTAAGTTTCCAGACATCTTAAGAATGCAAATTCT
TGTTTGGATTTATGTTCCGCCTCTTCCCCACATTTTCTTATCTATAGCCCTGCTTTCTTT
AAAGAGTATACTTGAATGAGAAAGCATTGCTGCTGAGGCAGCTATTTTTAAAAAGGTACT
TCTTCCAGGAGTAAGGAACTTATCTTTAAAGCACCTTCAAATGAAATTTTTCCTTCCGAT
ATTGAGATGGAGTCAAAATAAATGGTCTTTGTTTATGCTGTTTGAGTTACCAGCTCTTTG
GGTCTCTCAGACTTCACTCCCCAGTTCAGATAGTTCCTGCTAGAGGTGTAGGCTCCACTC
AGAGGCCATTGCACAGCCAGTACACGTTGACTGCCTGCTTGGATCAAGACACCTCATGTA
AGGTGCTCATAAAGTGCTCATCGTGTTGGCAGCAGTATCCCAGAAACAATTTTTCCCTCC
TCCTCACCTTGGAGGTGTGATGAGGTGTCAAGTGTCTTGGCTGCTTGAAGCTAGGGGCCC
TCAGCCCTCTGCACTCCCTTCTAGACAGGAGGCCCATTGCTTTGCTCTCTGGGTCAGAAT
TTCCCCTTCTCGGCATGTTTCTGGACCACATGCCTGTGGACAGCTATTTATTAACCGCGA
AACCCAATCTCTTACCAACCCATGACGTCTGGTGGGGGATAGTATTTGTTTTAAAGAAGC
ATTGTTTCTTTGGGGAGGGGGCAAACTTCTGTCTGGACTTTGAAGGGGACATAGTTACCA
TTCATTACCACCTACCCCCCAACAACTCTTTTCTTTACCTCTCAGCTTTTAATAAAAGAT
GACATCAGATCTTGAGGCAATTGGGTCACAATATTTTAGAATGCTTATTCCCCAGGGCAT
TTTCTGTTCTAGTCATATTTTTCCAGTCGAGTAATAGAGTTTCTGAGACTAGCTCACCGA
CGGCGAGGCTAGGGTGATTGATACAGTCATTCGTGTCACCTTTCCCACCCCCCGGAATTA
ATGTTTCTCTCTCTGGACTGGTCTTGGAAGTTGATACCTTTTGGCAAAGCTTAGCTTTAG
GAGAAGTCTTTCAAGCCCTGTTCAGTCGATCTGTGGTTTCTCCTTGCTTCCTCTGCCAGC
AGCCCTGGCCAGCCACACTGTGTGGATCCCAAGTGGAAAACAGCAGAGATGAAACACATT
CCTGGGGTATTTAAACTCTCACTCTGCCACCTTTCCAAGAGTGGGAGGCTGGCAGGGAGA
TGCTGCAATGCTTGATAATCATTTGGCCACATTGAAATTTCCAAAGGGAGCTTTTGCTGG
TGCTTAAAACCAAAATTCCTGGACATGTAAGATTGAATGAATCTAGCACAAAATATCCAT
TCTTGCCCCAGTGTACCCCCTTCCTCTCTGTCTTAAGCTTAAAAAAAAAAGAAAAAGAAA
AAGAAAAAGCCCAGGCCAAGGGTAATTTTTACTTGAAACCAGGAGAGTGGGGGAGGAACA
CTAGAGATGAGGGGCGAGCTGTGCAGGGAGTCATCCTGCTCCTGGTGTCTGTTCCAGTCA
CTGAGGACTGTCAGCCAGTGCCTTTCCTTCGCCTGGAGATGGAGCCCATCTCTTTCCACT
GGGTGAGGAGACCCTTTCTAACCAGGGGTGACCCTTAAAGAGGGTGTCTGGGAGAGCCCA
GAGGACACTCACATATTTGGGTGTCTATTTTAAGCATCCTTAAAATATTTTATATATTAA
AAAAAACAAAAAACAAAAAAAACGCTCTTCCCTGTCTTTGTGCCACCAGTGGCCCAGTTC
CATCCACTCTGAATGGAAAAGCGGAGACTGCCAGTACTTTTCTTGGTCTTCCCTTGGTCT
CTTGCTGCGGGTGTCCCATTCCCCCTCCTGTCCATCTCCCTGTGGTGGATGGAGAGCTGA
GGACACCATGCAGTCCTGAGGCAGTCCTATGTGACTCCAGGATCAGGTTTTTGTTTTTTG
TCTTTTCTAACTGTCCTTCCAAACCAGCAAGTGTTTGGAAACTAGGGGAAAAAATTAAAT
TCTCACCAATGGTTGCTGTTACAGTTAAATCAATAAAGATCTTGAGTGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 7 entry(ies)

More info

Predicted RNA structure(s): 7 entry(ies)

Help | Less info


               
               521-636, - strand, RNAz p=0.990073
               

               
               835-952, - strand, RNAz p=0.588938
               

               
               1278-1387, - strand, RNAz p=0.99962
               

               
               2304-2419, - strand, RNAz p=0.846756
               

               
               2537-2650, - strand, RNAz p=0.986298
               

               
               2680-2789, - strand, RNAz p=0.720911
               

               
               2957-3232, + strand, RNAz p=0.99568

Predicted RNA structure(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               521-636, - strand, RNAz p=0.990073
               

               
               835-952, - strand, RNAz p=0.588938
               

               
               1278-1387, - strand, RNAz p=0.99962
               

               
               2304-2419, - strand, RNAz p=0.846756
               

               
               2537-2650, - strand, RNAz p=0.986298
               

               
               2680-2789, - strand, RNAz p=0.720911
               

               
               2957-3232, + strand, RNAz p=0.99568

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               217-2789, gnl|bosTau2|chr28 (20606453-20603929)
               

               
               217-2789, gnl|Hg17|chr10 (71855034-71857957)
               


               
               2957-3232, gnl|bosTau2|chr10 (53067737-53068013)
               

               
               2957-3232, gnl|Hg17|chr10 (71858112-71858380)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-2789, gnl|bosTau2|chr28 (20606453-20603929)
               

               
               217-2789, gnl|Hg17|chr10 (71855034-71857957)
               


               
               2957-3232, gnl|bosTau2|chr10 (53067737-53068013)
               

               
               2957-3232, gnl|Hg17|chr10 (71858112-71858380)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

Help | Less info


               
               mas (0.42061)
               

               
               thg (0.380373)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               nco (0.323468)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ste (0.270416)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               thg (0.380373)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               nco (0.323468)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ste (0.270416)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	521-636, - strand, RNAz p=0.990073
	835-952, - strand, RNAz p=0.588938
	1278-1387, - strand, RNAz p=0.99962
	2304-2419, - strand, RNAz p=0.846756
	2537-2650, - strand, RNAz p=0.986298
	2680-2789, - strand, RNAz p=0.720911
	2957-3232, + strand, RNAz p=0.99568

	217-2789, gnl\|bosTau2\|chr28 (20606453-20603929)
	217-2789, gnl\|Hg17\|chr10 (71855034-71857957)

	2957-3232, gnl\|bosTau2\|chr10 (53067737-53068013)
	2957-3232, gnl\|Hg17\|chr10 (71858112-71858380)

	mas (0.42061)
	thg (0.380373)
	ecc (0.345105)
	mcp (0.341297)
	nco (0.323468)
	bfe (0.299715)
	fat (0.294855)
	ste (0.270416)
	clu (0.239292)
	ebs (0.236602)
	ece (0.229305)
	jca (0.22792)
	ldo (0.194005)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	ill (0.175593)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	csp (0.161186)
	tbr (0.154178)
	ski (0.146735)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	cty (0.10408)