Non-Coding RNA Search

Ss1.1-ruio09_k23.5

Sequence:


               
               TACGGAAACCGGCCCTACGACAGGCACATCAGCCCCCGGCAGAACCCGCTCGTCACCCTG
GGTGCCATCGGTGAAGGCTTCCACAACTACCATCACACCTTTCCCTTCGACTACTCTGCG
AGTGAATTGGGCTTAAATTTCAACCCGACCACCTGGTTCATTGACTTCATGTGCTGGCTG
GGGCTGGCCACTGACCGCAAACGGGCCACCAAGCTGATGATCGAGGCCCGGAAGGCCAGG
ACTGGAGACGGCAGTGCCTGACCCTGGAACCTGAAGACGCCTCCGTTCACGGCCTTTGTT
AATTACACTTCGCTCGGTCCCTGGCTCCCGGGAGGCGGTACAGGGTGGGGAGGGAGTGGA
ATCTGTGTGGTTCGGGAATTTTGTGTTGGGCTCAAAATAATGTCAAGATACAACTATCAA
TGAGAAGCATTTTTTAAAAAGTCAGTGTAGCTCTGATTGGACGCTAGAGCGGGGACACGT
GGTTTAATCCTACAACGACGTGTCAGACATTATCCTGTTCATTAACCCTGACGCGACGCA
GGAGTGTCATTCTTTCAGGGTGATTCAGGATAGCCCGTTCCCTTTTTCTACCCATTAACC
CAGCATTATTTTTAAACACAGTATCTGAAGGAGCAGAGAGGCAGGGTAGAACCCAAAACA
GAGGGTCTGAGTAGGCACTGAAGACTGTTTCTGTTTTGTAATTATCGTGCGTGCATTTTT
ATTGTTGTTTTTCAGTAAGAGAATCGACAGCTTAAAACGAAATGAGAATACAGGCAATGG
CTCTCTTATTTTCTTGACCTGTTTCCAGCTTGTTAATGCTCCATTGTCTTTGCTTCAAGA
GATCTGTTCACTGCTCAGCTAGTTTCACATCCTGAGCTCTATGCCCAGCTGACCTTATAA
ATCAATGCCTGTTTTAGGTGTTTGATTTTCTTCTTTGCTATTGTTATTTTAAGGTGTATA
ACTCAGAGGTGCCAGACATCAAATTAAGCGCAAATTAAGCTCTCATTTAAATGTTTAGAC
ATCTAATTTATATTCTAATTGATGCCAGCCAATGATGCATGTATTTTACCTACTCCTGCT
GAATAAGCATATTAATTTTCCACACCAGGCCATCAGATCTTAATAACCGACAGTTATCTA
GAACTCCGTGTCTACAAATGTTTCACCTGCATGCGGCCTTCATTGATTTTGCAGCAAGAC
ATAAAGTGATCATTATGTAGCTTCTGGATTAAAAAAAAAAATCGTGTGTTCAGTTGCGTT
GTAAAGAGCACGTCGTCTTAATGGGACAGTGTGCCCTTTGTGTTAGATGTTAGAGCAAAA
GAAAGCCTTAGAGTTTTGACATTGGAGCACTTCGAAGACAGTGCTTCAAAGATAGGGAAG
ATGTAGGATTTCAATTTCAATTTACAATTTTTGAGAACGAGATGACGCCAGTAGGAAATT
GCCATAATAAAGTTCTTCGCCCAGCAGGTGTTTCGCGGTGTTATTTTTGCCATTAATCAT
GTGTAAATATGGGTGATTTACAATAAATGATTATGAATTCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGGAAACCGGCCCTACGACAGGCACATCAGCCCCCGGCAGAACCCGCTCGTCACCCTG
GGTGCCATCGGTGAAGGCTTCCACAACTACCATCACACCTTTCCCTTCGACTACTCTGCG
AGTGAATTGGGCTTAAATTTCAACCCGACCACCTGGTTCATTGACTTCATGTGCTGGCTG
GGGCTGGCCACTGACCGCAAACGGGCCACCAAGCTGATGATCGAGGCCCGGAAGGCCAGG
ACTGGAGACGGCAGTGCCTGACCCTGGAACCTGAAGACGCCTCCGTTCACGGCCTTTGTT
AATTACACTTCGCTCGGTCCCTGGCTCCCGGGAGGCGGTACAGGGTGGGGAGGGAGTGGA
ATCTGTGTGGTTCGGGAATTTTGTGTTGGGCTCAAAATAATGTCAAGATACAACTATCAA
TGAGAAGCATTTTTTAAAAAGTCAGTGTAGCTCTGATTGGACGCTAGAGCGGGGACACGT
GGTTTAATCCTACAACGACGTGTCAGACATTATCCTGTTCATTAACCCTGACGCGACGCA
GGAGTGTCATTCTTTCAGGGTGATTCAGGATAGCCCGTTCCCTTTTTCTACCCATTAACC
CAGCATTATTTTTAAACACAGTATCTGAAGGAGCAGAGAGGCAGGGTAGAACCCAAAACA
GAGGGTCTGAGTAGGCACTGAAGACTGTTTCTGTTTTGTAATTATCGTGCGTGCATTTTT
ATTGTTGTTTTTCAGTAAGAGAATCGACAGCTTAAAACGAAATGAGAATACAGGCAATGG
CTCTCTTATTTTCTTGACCTGTTTCCAGCTTGTTAATGCTCCATTGTCTTTGCTTCAAGA
GATCTGTTCACTGCTCAGCTAGTTTCACATCCTGAGCTCTATGCCCAGCTGACCTTATAA
ATCAATGCCTGTTTTAGGTGTTTGATTTTCTTCTTTGCTATTGTTATTTTAAGGTGTATA
ACTCAGAGGTGCCAGACATCAAATTAAGCGCAAATTAAGCTCTCATTTAAATGTTTAGAC
ATCTAATTTATATTCTAATTGATGCCAGCCAATGATGCATGTATTTTACCTACTCCTGCT
GAATAAGCATATTAATTTTCCACACCAGGCCATCAGATCTTAATAACCGACAGTTATCTA
GAACTCCGTGTCTACAAATGTTTCACCTGCATGCGGCCTTCATTGATTTTGCAGCAAGAC
ATAAAGTGATCATTATGTAGCTTCTGGATTAAAAAAAAAAATCGTGTGTTCAGTTGCGTT
GTAAAGAGCACGTCGTCTTAATGGGACAGTGTGCCCTTTGTGTTAGATGTTAGAGCAAAA
GAAAGCCTTAGAGTTTTGACATTGGAGCACTTCGAAGACAGTGCTTCAAAGATAGGGAAG
ATGTAGGATTTCAATTTCAATTTACAATTTTTGAGAACGAGATGACGCCAGTAGGAAATT
GCCATAATAAAGTTCTTCGCCCAGCAGGTGTTTCGCGGTGTTATTTTTGCCATTAATCAT
GTGTAAATATGGGTGATTTACAATAAATGATTATGAATTCAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29294686|gb|AAH48971.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29294686|gb|AAH48971.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               475-589, + strand, RNAz p=0.574842
               

               
               786-903, - strand, RNAz p=0.899521

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-589, + strand, RNAz p=0.574842
               

               
               786-903, - strand, RNAz p=0.899521

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF389338, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF389338, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               70-248, gnl|bosTau2|chr26 (12715128-12715306)
               

               
               70-248, gnl|Hg17|chr10 (102110480-102110658)
               

               
               70-248, gnl|Mm7|chr19 (44196873-44197051)
               


               
               475-1296, gnl|bosTau2|chr11 (81265906-81265094)
               

               
               475-1296, gnl|Hg17|chr4 (83908926-83908114)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-248, gnl|bosTau2|chr26 (12715128-12715306)
               

               
               70-248, gnl|Hg17|chr10 (102110480-102110658)
               

               
               70-248, gnl|Mm7|chr19 (44196873-44197051)
               


               
               475-1296, gnl|bosTau2|chr11 (81265906-81265094)
               

               
               475-1296, gnl|Hg17|chr4 (83908926-83908114)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               spc (1.13366)
               

               
               sug (0.509165)
               

               
               fhi (0.508733)
               

               
               cbe (0.478469)
               

               
               hyp (0.42851)
               

               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               bla (0.248694)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.13366)
               

               
               sug (0.509165)
               

               
               fhi (0.508733)
               

               
               cbe (0.478469)
               

               
               hyp (0.42851)
               

               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               bla (0.248694)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

	475-589, + strand, RNAz p=0.574842
	786-903, - strand, RNAz p=0.899521

	70-248, gnl\|bosTau2\|chr26 (12715128-12715306)
	70-248, gnl\|Hg17\|chr10 (102110480-102110658)
	70-248, gnl\|Mm7\|chr19 (44196873-44197051)

	475-1296, gnl\|bosTau2\|chr11 (81265906-81265094)
	475-1296, gnl\|Hg17\|chr4 (83908926-83908114)

	spc (1.13366)
	sug (0.509165)
	fhi (0.508733)
	cbe (0.478469)
	hyp (0.42851)
	ret (0.3862)
	fco (0.314416)
	bla (0.248694)
	mas (0.210305)
	fcc (0.197785)
	fbs (0.175346)
	tbr (0.154178)
	spl (0.143184)
	kid (0.129735)
	ova (0.129132)