Non-Coding RNA Search

Ss1.1-ruio09_k7.5

Sequence:


               
               TTTCGTTAAACAGTAACATCAGTTAAAATATTGGAGTGAGTCTGAGTTTGTAATGTGTTA
TAAAATCTTGAACGATACTAAACTTGACTGCCACATTTTATTAAGAGGAAATTGGATTAT
ATGGTGGGTGGGAGCTAGTCTATGGTATATATGTAATCACTGTATAATTAGAAACACCAA
GTGCTGAATCCTATTCACTGTGTACTTGAGGGCCAGTCTTTGGATATGGTTGTCATTTTA
ATTCCTTGAAGACCATATGTAATTAAGGTGAGCAGAAGGCAAATAAAATTTTTAAACAAA
AATGCTTTTTGGGGTAATTATACCCCTCCAAAAAAAATTTACTATAAAAAACTTAGAGTT
GAGATTGAGAAGCTTGAAGAAGCCGCTTTTTAAGCAGTTCAGTCACTTACAATATTTTAT
GTTAAAGAAATTGTCATAATTCTTTCTGAGCCAAACTGTCACTAAAATGTCCTGTGACAG
AACCACTCCTCTTTTTTCTGCCATTCTGTGTACTGGAAGGGTTCTATGTTGTATTTGTTT
TTAATCTTTGATTTAAAAAAAATGGTTTTAGTGTTGCTTAGCTTCAGGTTGAAGTGTAAC
TTTCACTAATAACTGCAATAAAAAGAAAAGCTTTGCTCCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCGTTAAACAGTAACATCAGTTAAAATATTGGAGTGAGTCTGAGTTTGTAATGTGTTA
TAAAATCTTGAACGATACTAAACTTGACTGCCACATTTTATTAAGAGGAAATTGGATTAT
ATGGTGGGTGGGAGCTAGTCTATGGTATATATGTAATCACTGTATAATTAGAAACACCAA
GTGCTGAATCCTATTCACTGTGTACTTGAGGGCCAGTCTTTGGATATGGTTGTCATTTTA
ATTCCTTGAAGACCATATGTAATTAAGGTGAGCAGAAGGCAAATAAAATTTTTAAACAAA
AATGCTTTTTGGGGTAATTATACCCCTCCAAAAAAAATTTACTATAAAAAACTTAGAGTT
GAGATTGAGAAGCTTGAAGAAGCCGCTTTTTAAGCAGTTCAGTCACTTACAATATTTTAT
GTTAAAGAAATTGTCATAATTCTTTCTGAGCCAAACTGTCACTAAAATGTCCTGTGACAG
AACCACTCCTCTTTTTTCTGCCATTCTGTGTACTGGAAGGGTTCTATGTTGTATTTGTTT
TTAATCTTTGATTTAAAAAAAATGGTTTTAGTGTTGCTTAGCTTCAGGTTGAAGTGTAAC
TTTCACTAATAACTGCAATAAAAAGAAAAGCTTTGCTCCAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               12-642, gnl|bosTau2|chr3 (76808749-76808113)
               

               
               12-642, gnl|Hg17|chr1 (36206437-36207194)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-642, gnl|bosTau2|chr3 (76808749-76808113)
               

               
               12-642, gnl|Hg17|chr1 (36206437-36207194)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

	12-642, gnl\|bosTau2\|chr3 (76808749-76808113)
	12-642, gnl\|Hg17\|chr1 (36206437-36207194)

	fcc (0.197785)
	mgm (0.180343)
	tbr (0.154178)
	isp (0.150376)
	kid (0.129735)
	ecc (0.115035)