Non-Coding RNA Search

Ss1.1-ruio09_o22.5

Sequence:


               
               CCTAGGATTGCTGCAGGTCAACAGTCCCCTCTGGAGAAAAAAATCTTGAACCTAGGTGGC
GTGCATACAAGAGCAGCAAGACAACTGATAATTCAAAAATATCAAGAGGAGTATGAAACA
CTCTGTCGGGAGCAAGCTCTTTCCCTTGACTACTGGCTTGCCAAAGCAGAGTCTTATTAT
AATAAAAGAATAATGGAAATGATGGAAGAACAAGAGACAGGCAGTGACATCAAGAAGAGA
TTGGAGGAGGAAACAACCCAAAGCATAGAGAGACAAAGACGGTATTATTTGGTTCCTGAG
AGAGAGATGAGACACATAGAAAGGCACATACATCGAGCAGGAAAGGTCAGAGAGTTTAAG
AATAAAACATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGGATTGCTGCAGGTCAACAGTCCCCTCTGGAGAAAAAAATCTTGAACCTAGGTGGC
GTGCATACAAGAGCAGCAAGACAACTGATAATTCAAAAATATCAAGAGGAGTATGAAACA
CTCTGTCGGGAGCAAGCTCTTTCCCTTGACTACTGGCTTGCCAAAGCAGAGTCTTATTAT
AATAAAAGAATAATGGAAATGATGGAAGAACAAGAGACAGGCAGTGACATCAAGAAGAGA
TTGGAGGAGGAAACAACCCAAAGCATAGAGAGACAAAGACGGTATTATTTGGTTCCTGAG
AGAGAGATGAGACACATAGAAAGGCACATACATCGAGCAGGAAAGGTCAGAGAGTTTAAG
AATAAAACATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46237692|emb|CAE84063.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46237692|emb|CAE84063.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               48-372, gnl|bosTau2|chr23 (24008830-24009154)
               

               
               48-372, gnl|Hg17|chr6 (30133474-30133153)
               

               
               48-372, gnl|Mm7|chr17 (35116373-35116721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-372, gnl|bosTau2|chr23 (24008830-24009154)
               

               
               48-372, gnl|Hg17|chr6 (30133474-30133153)
               

               
               48-372, gnl|Mm7|chr17 (35116373-35116721)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.87822)
               

               
               tes (0.207814)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               tes (0.207814)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

	48-372, gnl\|bosTau2\|chr23 (24008830-24009154)
	48-372, gnl\|Hg17\|chr6 (30133474-30133153)
	48-372, gnl\|Mm7\|chr17 (35116373-35116721)

	cte (0.87822)
	tes (0.207814)
	pla (0.133672)
	kid (0.129735)
	thg (0.126791)