Non-Coding RNA Search

Ss1.1-ruio10_e15.5

Sequence:


               
               GCCCAACGAAATTCCCTTCGGGCAAGATTATGTTATAACAGAAAATTGAATCTGAGGCAG
AAGCTGCCACCCCTCTTCCAACATTTAGTCCTCCAGCAAACAGCATCTTTTTATCGTCTA
AGATATGGTTTGGGGATGCTAGGCCTCCAGGGCCGGGGGACAAAGCTTAAGCCACTTCAG
GGTTTTTTGGGGGGTGGGGGTGGGGCTAGGCAAGGTACTTGCTGTTAATTTTTGACACTA
GAAAGTCATCTTTTTAAAGAAAGCTGTTTTTCTAGGTGGGTGAAGAGTGAAACTGCCACG
TCTTTGTCGACTTAGTCCAAGAGATCACTCGAAACAACAGTAGATGTCTGAGTTTTGTTT
CTGTCTGTCTTTTTATTTTGAAAAAAACAATGTTAAGGGGGGAAGTATGGATTAACAGGA
GGGGATCCCTAGCCTTGTTTTCCTTAGAAGACTTGTTTAGTGTTTTATCAGACGTCTGTT
GTAGTTCTTTCTTGTAGATGGAAAAGCTTGTGAGAAAAACAAACACCACATGGAGCCTGT
AAATGTCTTTGCACAACCTGTAAAGCATTCTTGGAAGTGGCCAGTAAAAAGGGTTTTACC
ATTTAAAAAAAAAAAATGTAACTGTGTCATTGTTTACATCTGTAACTCTTTCTTCTTCCC
CTGTTCTCATTACAACATTCTGGCAAAATGTAGGCACAGTAGCTTCCAGTTTTAGAATAA
ATAACCATTTGAACTGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAACGAAATTCCCTTCGGGCAAGATTATGTTATAACAGAAAATTGAATCTGAGGCAG
AAGCTGCCACCCCTCTTCCAACATTTAGTCCTCCAGCAAACAGCATCTTTTTATCGTCTA
AGATATGGTTTGGGGATGCTAGGCCTCCAGGGCCGGGGGACAAAGCTTAAGCCACTTCAG
GGTTTTTTGGGGGGTGGGGGTGGGGCTAGGCAAGGTACTTGCTGTTAATTTTTGACACTA
GAAAGTCATCTTTTTAAAGAAAGCTGTTTTTCTAGGTGGGTGAAGAGTGAAACTGCCACG
TCTTTGTCGACTTAGTCCAAGAGATCACTCGAAACAACAGTAGATGTCTGAGTTTTGTTT
CTGTCTGTCTTTTTATTTTGAAAAAAACAATGTTAAGGGGGGAAGTATGGATTAACAGGA
GGGGATCCCTAGCCTTGTTTTCCTTAGAAGACTTGTTTAGTGTTTTATCAGACGTCTGTT
GTAGTTCTTTCTTGTAGATGGAAAAGCTTGTGAGAAAAACAAACACCACATGGAGCCTGT
AAATGTCTTTGCACAACCTGTAAAGCATTCTTGGAAGTGGCCAGTAAAAAGGGTTTTACC
ATTTAAAAAAAAAAAATGTAACTGTGTCATTGTTTACATCTGTAACTCTTTCTTCTTCCC
CTGTTCTCATTACAACATTCTGGCAAAATGTAGGCACAGTAGCTTCCAGTTTTAGAATAA
ATAACCATTTGAACTGAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-738, gnl|bosTau2|chr29 (32135177-32134456)
               

               
               1-738, gnl|Hg17|chr11 (62237396-62236682)
               

               
               1-738, gnl|Mm7|chr19 (8513576-8514305)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-738, gnl|bosTau2|chr29 (32135177-32134456)
               

               
               1-738, gnl|Hg17|chr11 (62237396-62236682)
               

               
               1-738, gnl|Mm7|chr19 (8513576-8514305)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               bla (0.248694)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               bla (0.248694)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	1-738, gnl\|bosTau2\|chr29 (32135177-32134456)
	1-738, gnl\|Hg17\|chr11 (62237396-62236682)
	1-738, gnl\|Mm7\|chr19 (8513576-8514305)

	fcc (0.39557)
	fbs (0.350693)
	spc (0.340097)
	fco (0.314416)
	bla (0.248694)
	gul (0.177588)
	rec (0.17307)
	cut (0.169924)
	spl (0.143184)
	csk (0.140746)
	nca (0.136874)
	ssp (0.13552)
	kid (0.129735)
	thg (0.126791)
	ese (0.126502)
	jej (0.0989218)