Non-Coding RNA Search

Ss1.1-ruio10_f14.5

Sequence:


               
               GTTTTTTTGTTTTTGTGTATGCAGATGTGAATATATGCATAGATATTTCCATGTGTCTGT
ATGAATAAATGGGAAAATAGTTATAAAAAAGGATAATATTATTTTATAAAGATTCACATA
AAAAATCTTTTCTACTACAAGATTATAAGTATTTAATTGAGCAGTGGAAGAATCTTATGG
TCCTTGTAATTCCTAAGATTTTTCCTTCTTAAACATATTATATTCATTTGGTGGAGTAAG
TAGAATCATTGTTTTGACTGATAATGCATCTCTTATAAATTTTTGTAGGTGCTGGGTCTT
CAGCTCTGAAGAGACCATTTGAAGATGGATTAGGGGATGATAAAGATCCCAATAAGAAGA
TGAAACGAAACTTAAGGAAAAGTGTGTAAAATATTTATTCTTACAGATATGAACTAGAAA
GGATTTGTAATCTTAGGAAAATAAAAAGTGAAGAATTTGATTTGAAGTGGAGTTTTAAGA
ATAAATCTTGACTGAGAAATTGATTGAATAACTTCTTTTGTTTCCAAGCTTCATTGGCTT
AAGCTATATTAATATTGAAAAACTAAAATTAATATATAGCTATAATAATGCATATTACTT
TTATAGTGACATTAGCATAATTATTTAAGAAGTAATTTTAAAATTATCATAAAGTGAAGT
TAATTTATGTCTGCATTTTGAAATTCTTATTTTTTTTTTTAAAACCTGAATGGTTACTAG
GAACCATTCAGAAACATTGTAGGTTACTAGGAACCTACAAACATATAGATTTAAGTAAAA
TGTTTTAAATTCTGATCTTATTCCTATTTCTCTCAACAGTTCTGGATAGTAAAGCAATAG
ACCTTATGAATGCATTAATGAGGCTAAATCAGATCAGGCCTGGGCTTCAGTATAAACTCT
TATCTCAGTCTGGTCCTGTTCACGCCCCAGTTTTCACAATGTCTGTAGATGTGGATGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTGTTTTTGTGTATGCAGATGTGAATATATGCATAGATATTTCCATGTGTCTGT
ATGAATAAATGGGAAAATAGTTATAAAAAAGGATAATATTATTTTATAAAGATTCACATA
AAAAATCTTTTCTACTACAAGATTATAAGTATTTAATTGAGCAGTGGAAGAATCTTATGG
TCCTTGTAATTCCTAAGATTTTTCCTTCTTAAACATATTATATTCATTTGGTGGAGTAAG
TAGAATCATTGTTTTGACTGATAATGCATCTCTTATAAATTTTTGTAGGTGCTGGGTCTT
CAGCTCTGAAGAGACCATTTGAAGATGGATTAGGGGATGATAAAGATCCCAATAAGAAGA
TGAAACGAAACTTAAGGAAAAGTGTGTAAAATATTTATTCTTACAGATATGAACTAGAAA
GGATTTGTAATCTTAGGAAAATAAAAAGTGAAGAATTTGATTTGAAGTGGAGTTTTAAGA
ATAAATCTTGACTGAGAAATTGATTGAATAACTTCTTTTGTTTCCAAGCTTCATTGGCTT
AAGCTATATTAATATTGAAAAACTAAAATTAATATATAGCTATAATAATGCATATTACTT
TTATAGTGACATTAGCATAATTATTTAAGAAGTAATTTTAAAATTATCATAAAGTGAAGT
TAATTTATGTCTGCATTTTGAAATTCTTATTTTTTTTTTTAAAACCTGAATGGTTACTAG
GAACCATTCAGAAACATTGTAGGTTACTAGGAACCTACAAACATATAGATTTAAGTAAAA
TGTTTTAAATTCTGATCTTATTCCTATTTCTCTCAACAGTTCTGGATAGTAAAGCAATAG
ACCTTATGAATGCATTAATGAGGCTAAATCAGATCAGGCCTGGGCTTCAGTATAAACTCT
TATCTCAGTCTGGTCCTGTTCACGCCCCAGTTTTCACAATGTCTGTAGATGTGGATGGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               268-387, + strand, RNAz p=0.551046

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-387, + strand, RNAz p=0.551046

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL833947, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL833947, +

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               2-148, gnl|bosTau2|chr11 (75704794-75704652)
               


               
               152-578, gnl|bosTau2|chr11 (75703928-75703518)
               

               
               152-578, gnl|Hg17|chr9 (122989841-122989473)
               

               
               152-578, gnl|Mm7|chr2 (37611439-37611039)
               


               
               586-960, gnl|bosTau2|chr11 (75703296-75702949)
               

               
               586-960, gnl|Hg17|chr9 (122989079-122988747)
               

               
               586-960, gnl|Mm7|chr2 (37610778-37610305)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-148, gnl|bosTau2|chr11 (75704794-75704652)
               


               
               152-578, gnl|bosTau2|chr11 (75703928-75703518)
               

               
               152-578, gnl|Hg17|chr9 (122989841-122989473)
               

               
               152-578, gnl|Mm7|chr2 (37611439-37611039)
               


               
               586-960, gnl|bosTau2|chr11 (75703296-75702949)
               

               
               586-960, gnl|Hg17|chr9 (122989079-122988747)
               

               
               586-960, gnl|Mm7|chr2 (37610778-37610305)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	2-148, gnl\|bosTau2\|chr11 (75704794-75704652)

	152-578, gnl\|bosTau2\|chr11 (75703928-75703518)
	152-578, gnl\|Hg17\|chr9 (122989841-122989473)
	152-578, gnl\|Mm7\|chr2 (37611439-37611039)

	586-960, gnl\|bosTau2\|chr11 (75703296-75702949)
	586-960, gnl\|Hg17\|chr9 (122989079-122988747)
	586-960, gnl\|Mm7\|chr2 (37610778-37610305)