Ss1.1-ruio10_f6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGAATCTGAATCTTTTCGACCAAACTTAAGTGATCCCAGTGAACTCTTACTGCCAGA TCAAATTGAAAAGCTTACCAAGCATCTTCCTCCAAGAACAATTGGCTACCCATGGACTCT TGTTTATGGTACCGGGAAGCATGGCACAAGCTTGAAGACCCTGTATCGAACAATGACAGG TTTAGACACCCCAGTGCTGATGGTGATTAAAGACAGTGATGGGCAGGTTTTTGGTGCATT AGCATCTGAGCCATTTAAAGTAAGTGATGGCTTTTATGGTACTGGAGAGACCTTTGTTTT TACATTCTGTCCAGAATTTGAGGTTTTTAAGTGGACAGGAGATAATATGTTTTTTATCAA GGGAGACATGGATTCACTAGCTTTTGGTGGTGGAGGGGGAGAATTTGCCCTCTGGCTTGA TGGAGATCTCTACCATGGAAGAAGCCATTCTTGTAAAACATTCGGGAATCGTACACTTTC TAAGAAGGAAGATTTCTTTATCCAAGACATTGAAATCTGGGCTTTTGAATGAATATAATG TTCTCTGTATAAGCAGGATAATGGCCCAAACCTGACATGGACAAACAAGCACTGTTTGGA AAGTTCAAAAAGCAATACAACGTAACATGTAACTTGTGCTTTAAATTAGTTCGTATCACC ATTTATTACAGCTATAATTTTGGAATTATTTTTAAAATCATGTTTCTTTTCCAGACTTCT TTAGGTTTAGTCCATGGTGTGGGTCCATGCAGTGTAACAGCTTAGGTTTTGTCAAAATTT GGTAGCATTTTGATCATAGTGACCCCCTCATCTACAGTCCATGTTATCTTAGTCTCCTAA TAGGATGGTGCTCTTTTGTTGAACCTGTTTTGGTTTATTATTTCTTAAACTATATTGATT GTTTTACCAGAGTAGTGGAACCTGGGATATTGAGGGAATGAAGACTAGATACCGCTGTAT CTGTGAGGTTGGCACAGGTAACTTTCGGACATGCTCAACTTAGGAAGGAAAAAACACATG CCAAAATAATGCATAATACTTCATGGGCCACTCAGTTTTAGTTTTAATTCACACTACAAC ATTTTCTTTATTAGTTTTGCCTATATTCTCAATTTCATTTTAATAAAAATGAAATTTGAG GAGAATTCTGATTGTAATAGACCACAATGCATATGATCTGCAGGTTTGGGCATCTGCTTT CATCACTGAATTACCTGATAAAGAGTTACAAAATGACAAAGGAGAATGAGAACTTGATGA TTCTACTGGATTTAATATATCAAGCAAGAAAATATACTATTTACATATTTGTAGCTTAGC AGGGCATTATCATAACTACAAAAACTATAAAACGGATGCATATTTCGTCAACATATTGTG TCAGGTATACTGTTTTATAGTTCTGTTGTTTTAGCCTTGTTGCACACCAACTCCCAAAAT ATAGGTTCCTGTTCAAAAGGAAAAACAAAAACTCGTGATTTTTTTGAGTGGTATGTGTTA TTGATTACCATTAGCATTTGCTGTTATAAAGGGGCAGTGATTATAGTAGAATATTTAACT CAGTAGACTTGTTGAATATGCAAACATACTGTCAAGTGACCTCAAAAAAAAAAAGATAGA ATATATCAGTAGTTCTTATCCTCTTTTGTAGGAAACCAATAATAAGCCATTGTGGCAATA ATTTATCATTTAATTTCAAAGCTTCATGTTATGCAAGAAAAAAAAAAAATCCTGCTGTTA TACATGTGACAGTGACCTTGTGCTGAAATTTCAGCTATTCCAGATAAACATTGTATATTA TCTTGTAAATTAATGTTTAAAAGTAGTTTTGTTCTTATAGAAAGTGTCGATTGCAGATTG CTTATAGCACTTTAAATTATTCTGGAAATGAAGTTATAAGCCAGATATGTTGGCTTAAGT AGTTTTAGTTGTATAGTACTTGAATATATTTAGATCTTTTGAAAGTTTAGATAATTATCT AAAGAAAGCCTAATGCTAATGAAAAAGAAAGTCTGATATTCTATTTAATATGCTATTGCT AAAATGAATAGAAATGCCGAGCATTGTTTCCTTGTCAATGTAAAGCTCTCATTAAAAGTT ACTAACAGTATATAGATTAAATGTTTACAATATAGGGAACTGTAAATAAATATCTCAGTT TTTCCCCCTTTGGGCTTCCACAGCAGTATTATTGTCTTTGTGGAGTTGACTAATCATAAA AAAATCCTGTATTGGATTTTAATTACAATAAGATCATAGTGGTATATACCAAATAAAATT AAATACGTAAATATAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGAATCTGAATCTTTTCGACCAAACTTAAGTGATCCCAGTGAACTCTTACTGCCAGA TCAAATTGAAAAGCTTACCAAGCATCTTCCTCCAAGAACAATTGGCTACCCATGGACTCT TGTTTATGGTACCGGGAAGCATGGCACAAGCTTGAAGACCCTGTATCGAACAATGACAGG TTTAGACACCCCAGTGCTGATGGTGATTAAAGACAGTGATGGGCAGGTTTTTGGTGCATT AGCATCTGAGCCATTTAAAGTAAGTGATGGCTTTTATGGTACTGGAGAGACCTTTGTTTT TACATTCTGTCCAGAATTTGAGGTTTTTAAGTGGACAGGAGATAATATGTTTTTTATCAA GGGAGACATGGATTCACTAGCTTTTGGTGGTGGAGGGGGAGAATTTGCCCTCTGGCTTGA TGGAGATCTCTACCATGGAAGAAGCCATTCTTGTAAAACATTCGGGAATCGTACACTTTC TAAGAAGGAAGATTTCTTTATCCAAGACATTGAAATCTGGGCTTTTGAATGAATATAATG TTCTCTGTATAAGCAGGATAATGGCCCAAACCTGACATGGACAAACAAGCACTGTTTGGA AAGTTCAAAAAGCAATACAACGTAACATGTAACTTGTGCTTTAAATTAGTTCGTATCACC ATTTATTACAGCTATAATTTTGGAATTATTTTTAAAATCATGTTTCTTTTCCAGACTTCT TTAGGTTTAGTCCATGGTGTGGGTCCATGCAGTGTAACAGCTTAGGTTTTGTCAAAATTT GGTAGCATTTTGATCATAGTGACCCCCTCATCTACAGTCCATGTTATCTTAGTCTCCTAA TAGGATGGTGCTCTTTTGTTGAACCTGTTTTGGTTTATTATTTCTTAAACTATATTGATT GTTTTACCAGAGTAGTGGAACCTGGGATATTGAGGGAATGAAGACTAGATACCGCTGTAT CTGTGAGGTTGGCACAGGTAACTTTCGGACATGCTCAACTTAGGAAGGAAAAAACACATG CCAAAATAATGCATAATACTTCATGGGCCACTCAGTTTTAGTTTTAATTCACACTACAAC ATTTTCTTTATTAGTTTTGCCTATATTCTCAATTTCATTTTAATAAAAATGAAATTTGAG GAGAATTCTGATTGTAATAGACCACAATGCATATGATCTGCAGGTTTGGGCATCTGCTTT CATCACTGAATTACCTGATAAAGAGTTACAAAATGACAAAGGAGAATGAGAACTTGATGA TTCTACTGGATTTAATATATCAAGCAAGAAAATATACTATTTACATATTTGTAGCTTAGC AGGGCATTATCATAACTACAAAAACTATAAAACGGATGCATATTTCGTCAACATATTGTG TCAGGTATACTGTTTTATAGTTCTGTTGTTTTAGCCTTGTTGCACACCAACTCCCAAAAT ATAGGTTCCTGTTCAAAAGGAAAAACAAAAACTCGTGATTTTTTTGAGTGGTATGTGTTA TTGATTACCATTAGCATTTGCTGTTATAAAGGGGCAGTGATTATAGTAGAATATTTAACT CAGTAGACTTGTTGAATATGCAAACATACTGTCAAGTGACCTCAAAAAAAAAAAGATAGA ATATATCAGTAGTTCTTATCCTCTTTTGTAGGAAACCAATAATAAGCCATTGTGGCAATA ATTTATCATTTAATTTCAAAGCTTCATGTTATGCAAGAAAAAAAAAAAATCCTGCTGTTA TACATGTGACAGTGACCTTGTGCTGAAATTTCAGCTATTCCAGATAAACATTGTATATTA TCTTGTAAATTAATGTTTAAAAGTAGTTTTGTTCTTATAGAAAGTGTCGATTGCAGATTG CTTATAGCACTTTAAATTATTCTGGAAATGAAGTTATAAGCCAGATATGTTGGCTTAAGT AGTTTTAGTTGTATAGTACTTGAATATATTTAGATCTTTTGAAAGTTTAGATAATTATCT AAAGAAAGCCTAATGCTAATGAAAAAGAAAGTCTGATATTCTATTTAATATGCTATTGCT AAAATGAATAGAAATGCCGAGCATTGTTTCCTTGTCAATGTAAAGCTCTCATTAAAAGTT ACTAACAGTATATAGATTAAATGTTTACAATATAGGGAACTGTAAATAAATATCTCAGTT TTTCCCCCTTTGGGCTTCCACAGCAGTATTATTGTCTTTGTGGAGTTGACTAATCATAAA AAAATCCTGTATTGGATTTTAATTACAATAAGATCATAGTGGTATATACCAAATAAAATT AAATACGTAAATATAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1088-1207, - strand, RNAz p=0.932746 | |
| 1845-2000, - strand, RNAz p=0.617025 | |
| 2153-2264, - strand, RNAz p=0.634711 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1088-1207, - strand, RNAz p=0.932746 | |
| 1845-2000, - strand, RNAz p=0.617025 | |
| 2153-2264, - strand, RNAz p=0.634711 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 70-228, gnl|bosTau2|chr14 (35099689-35099847) | |
| 70-228, gnl|canFam2|chr13 (10597795-10597964) | |
| 70-228, gnl|canFam2|chr13 (10597800-10597954) | |
| 70-228, gnl|danRer3|chrNA (2679775-2679944) | |
| 70-228, gnl|danRer3|chrNA (2679780-2679934) | |
| 70-228, gnl|dasNov1|scaffold_210767 (3158-3312) | |
| 70-228, gnl|dasNov1|scaffold_210767 (3151-3302) | |
| 70-228, gnl|echTel1|scaffold_53859 (5333-5164) | |
| 70-228, gnl|echTel1|scaffold_53859 (5326-5176) | |
| 70-228, gnl|fr1|chrUn (97958404-97958244) | |
| 70-228, gnl|fr1|chrUn (97958400-97958248) | |
| 70-228, gnl|galGal2|chr2 (129929770-129929939) | |
| 70-228, gnl|galGal2|chr2 (129929775-129929929) | |
| 70-228, gnl|hg17|chr15 (46804855-46805013) | |
| 70-228, gnl|hg17|chr8 (107821739-107821908) | |
| 70-228, gnl|Hg17|chr8 (107821743-107821901) | |
| 70-228, gnl|loxAfr1|scaffold_41050 (7263-7094) | |
| 70-228, gnl|loxAfr1|scaffold_41050 (7257-7105) | |
| 70-228, gnl|mm7|chr15 (41850289-41850458) | |
| 70-228, gnl|mm7|chr15 (41850295-41850448) | |
| 70-228, gnl|Mm7|chr15 (41850293-41850451) | |
| 70-228, gnl|monDom2|scaffold_3 (54918789-54918620) | |
| 70-228, gnl|monDom2|scaffold_3 (54918782-54918630) | |
| 70-228, gnl|oryCun1|scaffold_168273 (946-777) | |
| 70-228, gnl|oryCun1|scaffold_168273 (941-787) | |
| 70-228, gnl|panTro1|chr16 (46783341-46783495) | |
| 70-228, gnl|panTro1|chr7 (110247965-110248134) | |
| 70-228, gnl|rheMac2|chr8 (109198405-109198574) | |
| 70-228, gnl|rheMac2|chr8 (109198410-109198564) | |
| 70-228, gnl|rn3|chr7 (77513654-77513823) | |
| 70-228, gnl|rn3|chr7 (77513660-77513813) | |
| 70-228, gnl|tetNig1|chr8 (895091-894934) | |
| 70-228, gnl|tetNig1|chr8 (895091-894939) | |
| 70-228, gnl|xenTro1|scaffold_3 (4104908-4104757) | |
| 70-228, gnl|xenTro1|scaffold_3 (4104916-4104762) | |
| 396-2297, gnl|bosTau2|chr14 (35105542-35107447) | |
| 396-2297, gnl|Hg17|chr8 (107832209-107834098) | |
| 396-2297, gnl|Mm7|chr15 (41858079-41859970) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 70-228, gnl|bosTau2|chr14 (35099689-35099847) | |
| 70-228, gnl|canFam2|chr13 (10597795-10597964) | |
| 70-228, gnl|canFam2|chr13 (10597800-10597954) | |
| 70-228, gnl|danRer3|chrNA (2679775-2679944) | |
| 70-228, gnl|danRer3|chrNA (2679780-2679934) | |
| 70-228, gnl|dasNov1|scaffold_210767 (3158-3312) | |
| 70-228, gnl|dasNov1|scaffold_210767 (3151-3302) | |
| 70-228, gnl|echTel1|scaffold_53859 (5333-5164) | |
| 70-228, gnl|echTel1|scaffold_53859 (5326-5176) | |
| 70-228, gnl|fr1|chrUn (97958404-97958244) | |
| 70-228, gnl|fr1|chrUn (97958400-97958248) | |
| 70-228, gnl|galGal2|chr2 (129929770-129929939) | |
| 70-228, gnl|galGal2|chr2 (129929775-129929929) | |
| 70-228, gnl|hg17|chr15 (46804855-46805013) | |
| 70-228, gnl|hg17|chr8 (107821739-107821908) | |
| 70-228, gnl|Hg17|chr8 (107821743-107821901) | |
| 70-228, gnl|loxAfr1|scaffold_41050 (7263-7094) | |
| 70-228, gnl|loxAfr1|scaffold_41050 (7257-7105) | |
| 70-228, gnl|mm7|chr15 (41850289-41850458) | |
| 70-228, gnl|mm7|chr15 (41850295-41850448) | |
| 70-228, gnl|Mm7|chr15 (41850293-41850451) | |
| 70-228, gnl|monDom2|scaffold_3 (54918789-54918620) | |
| 70-228, gnl|monDom2|scaffold_3 (54918782-54918630) | |
| 70-228, gnl|oryCun1|scaffold_168273 (946-777) | |
| 70-228, gnl|oryCun1|scaffold_168273 (941-787) | |
| 70-228, gnl|panTro1|chr16 (46783341-46783495) | |
| 70-228, gnl|panTro1|chr7 (110247965-110248134) | |
| 70-228, gnl|rheMac2|chr8 (109198405-109198574) | |
| 70-228, gnl|rheMac2|chr8 (109198410-109198564) | |
| 70-228, gnl|rn3|chr7 (77513654-77513823) | |
| 70-228, gnl|rn3|chr7 (77513660-77513813) | |
| 70-228, gnl|tetNig1|chr8 (895091-894934) | |
| 70-228, gnl|tetNig1|chr8 (895091-894939) | |
| 70-228, gnl|xenTro1|scaffold_3 (4104908-4104757) | |
| 70-228, gnl|xenTro1|scaffold_3 (4104916-4104762) | |
| 396-2297, gnl|bosTau2|chr14 (35105542-35107447) | |
| 396-2297, gnl|Hg17|chr8 (107832209-107834098) | |
| 396-2297, gnl|Mm7|chr15 (41858079-41859970) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cte (1.17096) | |
| fco (0.943248) | |
| kid (0.778412) | |
| ret (0.643666) | |
| fce (0.543183) | |
| bfe (0.449573) | |
| fty (0.351679) | |
| rec (0.346141) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ste (0.270416) | |
| jca (0.22792) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| nje (0.16592) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.17096) | |
| fco (0.943248) | |
| kid (0.778412) | |
| ret (0.643666) | |
| fce (0.543183) | |
| bfe (0.449573) | |
| fty (0.351679) | |
| rec (0.346141) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ste (0.270416) | |
| jca (0.22792) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| nje (0.16592) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eje (0.0988338) |