Non-Coding RNA Search

Ss1.1-ruio11_c6.5

Sequence:


               
               CCCACACAGGTGAGAAGAAATTTGCCTGTCCCATGTGTGACCGGCGGTTCATGAGGAGTG
ACCATTTGACCAAGCATGCCCGACGCCATCTGTCGGCCAAGAAGCTACCAAACTGGCAGA
TGGAAGTTAGCAAGTTAAATGACATTTCCCTACCTCCAACCCCTGCTCCCACGCAGTGAC
AGCTTGGATGGCAGAGAACTAACTTTTGTCACAGCCGGGAGCGAATGGTGATATGAAAAT
GCTTCCACTGCAGGTCTGTGGCCCTCCAGTGTGGGCTACAAGCAGAAGAAGGCCCATGGC
CTGGGGAGAAGGCCCAGCCTGGGTTAGATGGTAAGAAGTGCTGCGGCCACAGGCAGGTCA
CAGAGTTGCAGGACTCATTTCTTACCGCATAAGAGAGATGAGAAAGTTTTTATTCCTTTC
AATGTTTTCTGAAGGTTGCAGGTGAAGTCAGCCACAGGTAGCACAGGTTTTGAATATGTG
TGCACAATTTGTTACTTTCACCGTTTATACTTGAGACCAACTTTTCAATGTGATTCTTCT
AAAGCACTGGTTTCAAGTGTAGAGACTGGAAATAAACATTACGGTACAGAGATGGAGATG
TAGAATTGATTTGTATTATCACGAATATTATCTTTTCCTAGAGTTACCTTGTTTACTATT
AGTCTTTCCATTCAATTTCGTGGATGTAGTTGTTAAGTATATCTAGAACTAGCATTTTTA
TACTAGTCACTGATGTTCGGAATTAAGCAGCTGTATATTGCTAAAGAGGTCCCAAAAATT
GGAATCCTCATTAATTTAATTGCTCTGAAGTGTAGCTTTAACTTCTTTGCATTTTTATTT
TGAAATTTAACAAAAGACCATAACTAGGCATTTTATTACGCTTTGAACTTTAGTTGGCTG
CATTTTTTGTGTAGATTTGAAAACTGTATACCAATGTGTTTTCTGTAGACTCTAAAATAC
ACTGCACTTTGTTTAGGAAAAAAAAAGATGAAAACATATATTGTAAAGAAGGGATGTTAA
GGGTTTCAGATAACTTCTTGAAAAAGATGACATAGGTCATCAGTAACGAACCCTTATGCT
ACCAGGATATAATGTGTGCTTCATTGAATTAGAAAGTTAGTGACCGTTATTCACAAATGG
ACAAATGTCCAATTAATTTATGAGAGTTTTTTTGGGGGGGGATTCAGAACTAGGTAGGTA
GAAAAAATATTAGAACATTCACTTTCGTTAACAGTATTTCTGTTATATTCTGTTGTATAG
TGGATAATATACACAGTGGTAAAACAAAAGTCAGTTGTTTAAAATATATAGTGAAAAATG
TCACTATGTCTTTTCATTTAACATTTTTCTCTATTGGGTGTAGATTTCTGCCATCAAAAC
TTTGGGCCCTTGGAAAACAAGAGTTTTCTTTTAATTAAAAAAAATCCTTGTGATTTTACA
GTTTGCACAATATTTGTTCTGTTGTACTTTATATCTTGTTTACAATAAAGAATTTCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACACAGGTGAGAAGAAATTTGCCTGTCCCATGTGTGACCGGCGGTTCATGAGGAGTG
ACCATTTGACCAAGCATGCCCGACGCCATCTGTCGGCCAAGAAGCTACCAAACTGGCAGA
TGGAAGTTAGCAAGTTAAATGACATTTCCCTACCTCCAACCCCTGCTCCCACGCAGTGAC
AGCTTGGATGGCAGAGAACTAACTTTTGTCACAGCCGGGAGCGAATGGTGATATGAAAAT
GCTTCCACTGCAGGTCTGTGGCCCTCCAGTGTGGGCTACAAGCAGAAGAAGGCCCATGGC
CTGGGGAGAAGGCCCAGCCTGGGTTAGATGGTAAGAAGTGCTGCGGCCACAGGCAGGTCA
CAGAGTTGCAGGACTCATTTCTTACCGCATAAGAGAGATGAGAAAGTTTTTATTCCTTTC
AATGTTTTCTGAAGGTTGCAGGTGAAGTCAGCCACAGGTAGCACAGGTTTTGAATATGTG
TGCACAATTTGTTACTTTCACCGTTTATACTTGAGACCAACTTTTCAATGTGATTCTTCT
AAAGCACTGGTTTCAAGTGTAGAGACTGGAAATAAACATTACGGTACAGAGATGGAGATG
TAGAATTGATTTGTATTATCACGAATATTATCTTTTCCTAGAGTTACCTTGTTTACTATT
AGTCTTTCCATTCAATTTCGTGGATGTAGTTGTTAAGTATATCTAGAACTAGCATTTTTA
TACTAGTCACTGATGTTCGGAATTAAGCAGCTGTATATTGCTAAAGAGGTCCCAAAAATT
GGAATCCTCATTAATTTAATTGCTCTGAAGTGTAGCTTTAACTTCTTTGCATTTTTATTT
TGAAATTTAACAAAAGACCATAACTAGGCATTTTATTACGCTTTGAACTTTAGTTGGCTG
CATTTTTTGTGTAGATTTGAAAACTGTATACCAATGTGTTTTCTGTAGACTCTAAAATAC
ACTGCACTTTGTTTAGGAAAAAAAAAGATGAAAACATATATTGTAAAGAAGGGATGTTAA
GGGTTTCAGATAACTTCTTGAAAAAGATGACATAGGTCATCAGTAACGAACCCTTATGCT
ACCAGGATATAATGTGTGCTTCATTGAATTAGAAAGTTAGTGACCGTTATTCACAAATGG
ACAAATGTCCAATTAATTTATGAGAGTTTTTTTGGGGGGGGATTCAGAACTAGGTAGGTA
GAAAAAATATTAGAACATTCACTTTCGTTAACAGTATTTCTGTTATATTCTGTTGTATAG
TGGATAATATACACAGTGGTAAAACAAAAGTCAGTTGTTTAAAATATATAGTGAAAAATG
TCACTATGTCTTTTCATTTAACATTTTTCTCTATTGGGTGTAGATTTCTGCCATCAAAAC
TTTGGGCCCTTGGAAAACAAGAGTTTTCTTTTAATTAAAAAAAATCCTTGTGATTTTACA
GTTTGCACAATATTTGTTCTGTTGTACTTTATATCTTGTTTACAATAAAGAATTTCCTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               270-426, - strand, RNAz p=0.936773
               

               
               724-840, + strand, RNAz p=0.658921

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-426, - strand, RNAz p=0.936773
               

               
               724-840, + strand, RNAz p=0.658921

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC095399, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC095399, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1500, gnl|bosTau2|chr14 (36489432-36487919)
               

               
               1-1500, gnl|Hg17|chr8 (103731714-103730192)
               

               
               1-1500, gnl|Mm7|chr15 (38406770-38405106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1500, gnl|bosTau2|chr14 (36489432-36487919)
               

               
               1-1500, gnl|Hg17|chr8 (103731714-103730192)
               

               
               1-1500, gnl|Mm7|chr15 (38406770-38405106)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               liv (0.438853)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

	270-426, - strand, RNAz p=0.936773
	724-840, + strand, RNAz p=0.658921

	1-1500, gnl\|bosTau2\|chr14 (36489432-36487919)
	1-1500, gnl\|Hg17\|chr8 (103731714-103730192)
	1-1500, gnl\|Mm7\|chr15 (38406770-38405106)

	liv (0.438853)
	vin (0.332557)
	kid (0.259471)
	cty (0.20816)
	eje (0.197668)
	cki (0.165235)
	cag (0.151194)
	spl (0.143184)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	eru (0.120048)