Ss1.1-ruio11_e12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGTCCGACGTGGAAGTTGCTGGCTGACCAGGCTTCCAAGGAAACCGCCTCGGAGCTG GAGACGGAGCTGGAGTGCAGGCCTAGGCGAGGGGCGGTGGCGGCGCCAAGGCTCGAATAG GAGTCGTTGCCAAGGCTGGGGCCGGTCTCTGACGATCGACGAGGGCGGAGAGGAGGTTCA TCATGGGTGGCTTTTTCTCAAGCATTTTCTCCAGTCTGTTCGGAACCCGGGAAATGAGGA TTTTAATTTTGGGATTAGATGGAGCAGGAAAAACTACAATTTTGTACAGATTACAGGTTG GAGAAGTCGTAACCACTATTCCTACCATTGGATTTAATGTTGAGACGGTAACATACAAGA ATCTTAAATTCCAAGTCTGGGATTTAGGAGGACAGACAAGTATCAGGCCATACTGGAGAT GTTATTATTCAAACACAGATGCAGTCATTTATGTAGTAGACAGTTGTGACCGAGACCGAA TTGGCATTTCCAAGTCAGAGTTAGTTGCCATGTTGGAGGAAGAAGAGCTTAGAAAAGCCA TTTTAGTGGTGTTTGCAAATAAACAGGACATGGAACAGGCCATGACTCCGTCAGAGATGG CAAATTCGCTTGGCTTACCTGCCTTGAAGGACCGAAAATGGCAAATATTCAAAACTTCAG CAACCAAAGGCACTGGCCTTGATGAGGCAATGGAGTGGTTAGTTGAAACATTAAAGAGCA GACAATAATTCAGTCACTTCTGTTCCTCTGAAATGAAGACCACATCACATATCCCTTTGG AAACAGCTAAGTGTGCTTCACACTACAAAATGTTAAAACTGTATGATCGCTGGCATATAC CGAACTGACTGCAACATTTGTAATAAATATAACAAATAAGTATCTGGTTGGAAGGGTAAC TCATCGTGATTGAACCCACTGAAAGTCTGTTCTGTATAATGTAAAATACTCCTTCCTTGC TTTCTAGTGTTAAGGTATATAGTTTATTTGTATGGAATTCTTATTTAGATACAGTTCCAT TAAAGAATGTACTTATTGAGGAAAAAACCTTCCAATTTTTAAATTAGTGGTTGCAGCTTG TTTGTATTAACACTAATAAATATCTTGACTCAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGTCCGACGTGGAAGTTGCTGGCTGACCAGGCTTCCAAGGAAACCGCCTCGGAGCTG GAGACGGAGCTGGAGTGCAGGCCTAGGCGAGGGGCGGTGGCGGCGCCAAGGCTCGAATAG GAGTCGTTGCCAAGGCTGGGGCCGGTCTCTGACGATCGACGAGGGCGGAGAGGAGGTTCA TCATGGGTGGCTTTTTCTCAAGCATTTTCTCCAGTCTGTTCGGAACCCGGGAAATGAGGA TTTTAATTTTGGGATTAGATGGAGCAGGAAAAACTACAATTTTGTACAGATTACAGGTTG GAGAAGTCGTAACCACTATTCCTACCATTGGATTTAATGTTGAGACGGTAACATACAAGA ATCTTAAATTCCAAGTCTGGGATTTAGGAGGACAGACAAGTATCAGGCCATACTGGAGAT GTTATTATTCAAACACAGATGCAGTCATTTATGTAGTAGACAGTTGTGACCGAGACCGAA TTGGCATTTCCAAGTCAGAGTTAGTTGCCATGTTGGAGGAAGAAGAGCTTAGAAAAGCCA TTTTAGTGGTGTTTGCAAATAAACAGGACATGGAACAGGCCATGACTCCGTCAGAGATGG CAAATTCGCTTGGCTTACCTGCCTTGAAGGACCGAAAATGGCAAATATTCAAAACTTCAG CAACCAAAGGCACTGGCCTTGATGAGGCAATGGAGTGGTTAGTTGAAACATTAAAGAGCA GACAATAATTCAGTCACTTCTGTTCCTCTGAAATGAAGACCACATCACATATCCCTTTGG AAACAGCTAAGTGTGCTTCACACTACAAAATGTTAAAACTGTATGATCGCTGGCATATAC CGAACTGACTGCAACATTTGTAATAAATATAACAAATAAGTATCTGGTTGGAAGGGTAAC TCATCGTGATTGAACCCACTGAAAGTCTGTTCTGTATAATGTAAAATACTCCTTCCTTGC TTTCTAGTGTTAAGGTATATAGTTTATTTGTATGGAATTCTTATTTAGATACAGTTCCAT TAAAGAATGTACTTATTGAGGAAAAAACCTTCCAATTTTTAAATTAGTGGTTGCAGCTTG TTTGTATTAACACTAATAAATATCTTGACTCAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 186-324, gnl|bosTau2|chr5 (41652837-41652975) | |
| 186-324, gnl|canFam2|chr15 (43408125-43408263) | |
| 186-324, gnl|danRer3|chrNA (198733163-198733025) | |
| 186-324, gnl|dasNov1|scaffold_5045 (41818-41956) | |
| 186-324, gnl|echTel1|scaffold_272281 (9348-9478) | |
| 186-324, gnl|fr1|chrUn (73314999-73314861) | |
| 186-324, gnl|galGal2|chr1 (44467144-44467282) | |
| 186-324, gnl|hg17|chr12 (100302091-100302229) | |
| 186-324, gnl|Hg17|chr12 (100302228-100302090) | |
| 186-324, gnl|loxAfr1|scaffold_1531 (110590-110728) | |
| 186-324, gnl|mm7|chr10 (88292454-88292316) | |
| 186-324, gnl|Mm7|chr10 (88292315-88292453) | |
| 186-324, gnl|monDom2|scaffold_34 (11944853-11944715) | |
| 186-324, gnl|oryCun1|scaffold_175057 (12349-12487) | |
| 186-324, gnl|panTro1|chr10 (102756008-102756146) | |
| 186-324, gnl|rheMac2|chr13 (8844920-8845060) | |
| 186-324, gnl|rn3|chr7 (25426309-25426171) | |
| 186-324, gnl|tetNig1|chrUn_random (55201595-55201457) | |
| 186-324, gnl|xenTro1|scaffold_230 (445019-444881) | |
| 405-536, gnl|bosTau2|chr5 (41655846-41655978) | |
| 405-536, gnl|canFam2|chr15 (43404337-43404444) | |
| 405-536, gnl|danRer3|chrNA (198733531-198733423) | |
| 405-536, gnl|dasNov1|scaffold_62291 (45132-45240) | |
| 405-536, gnl|echTel1|scaffold_272281 (9166-9264) | |
| 405-536, gnl|fr1|chrUn (73315604-73315496) | |
| 405-536, gnl|galGal2|chr1 (44464627-44464735) | |
| 405-536, gnl|Hg17|chr12 (100297421-100297284) | |
| 405-536, gnl|hg17|chr2 (8848447-8848548) | |
| 405-536, gnl|loxAfr1|scaffold_11970 (34472-34580) | |
| 405-536, gnl|Mm7|chr10 (88295862-88295996) | |
| 405-536, gnl|mm7|chr12 (22867657-22867555) | |
| 405-536, gnl|monDom2|scaffold_19 (44308926-44308821) | |
| 405-536, gnl|oryCun1|scaffold_175057 (7183-7291) | |
| 405-536, gnl|panTro1|chr12 (9495186-9495287) | |
| 405-536, gnl|rheMac2|chr13 (8844405-8844526) | |
| 405-536, gnl|rn3|chr6 (71623624-71623732) | |
| 405-536, gnl|tetNig1|chrUn_random (55202282-55202174) | |
| 405-536, gnl|xenTro1|scaffold_230 (448447-448340) | |
| 697-1114, gnl|bosTau2|chr5 (41659562-41659982) | |
| 697-1114, gnl|Hg17|chr12 (100291917-100291509) | |
| 697-1114, gnl|Mm7|chr10 (88301794-88302193) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 186-324, gnl|bosTau2|chr5 (41652837-41652975) | |
| 186-324, gnl|canFam2|chr15 (43408125-43408263) | |
| 186-324, gnl|danRer3|chrNA (198733163-198733025) | |
| 186-324, gnl|dasNov1|scaffold_5045 (41818-41956) | |
| 186-324, gnl|echTel1|scaffold_272281 (9348-9478) | |
| 186-324, gnl|fr1|chrUn (73314999-73314861) | |
| 186-324, gnl|galGal2|chr1 (44467144-44467282) | |
| 186-324, gnl|hg17|chr12 (100302091-100302229) | |
| 186-324, gnl|Hg17|chr12 (100302228-100302090) | |
| 186-324, gnl|loxAfr1|scaffold_1531 (110590-110728) | |
| 186-324, gnl|mm7|chr10 (88292454-88292316) | |
| 186-324, gnl|Mm7|chr10 (88292315-88292453) | |
| 186-324, gnl|monDom2|scaffold_34 (11944853-11944715) | |
| 186-324, gnl|oryCun1|scaffold_175057 (12349-12487) | |
| 186-324, gnl|panTro1|chr10 (102756008-102756146) | |
| 186-324, gnl|rheMac2|chr13 (8844920-8845060) | |
| 186-324, gnl|rn3|chr7 (25426309-25426171) | |
| 186-324, gnl|tetNig1|chrUn_random (55201595-55201457) | |
| 186-324, gnl|xenTro1|scaffold_230 (445019-444881) | |
| 405-536, gnl|bosTau2|chr5 (41655846-41655978) | |
| 405-536, gnl|canFam2|chr15 (43404337-43404444) | |
| 405-536, gnl|danRer3|chrNA (198733531-198733423) | |
| 405-536, gnl|dasNov1|scaffold_62291 (45132-45240) | |
| 405-536, gnl|echTel1|scaffold_272281 (9166-9264) | |
| 405-536, gnl|fr1|chrUn (73315604-73315496) | |
| 405-536, gnl|galGal2|chr1 (44464627-44464735) | |
| 405-536, gnl|Hg17|chr12 (100297421-100297284) | |
| 405-536, gnl|hg17|chr2 (8848447-8848548) | |
| 405-536, gnl|loxAfr1|scaffold_11970 (34472-34580) | |
| 405-536, gnl|Mm7|chr10 (88295862-88295996) | |
| 405-536, gnl|mm7|chr12 (22867657-22867555) | |
| 405-536, gnl|monDom2|scaffold_19 (44308926-44308821) | |
| 405-536, gnl|oryCun1|scaffold_175057 (7183-7291) | |
| 405-536, gnl|panTro1|chr12 (9495186-9495287) | |
| 405-536, gnl|rheMac2|chr13 (8844405-8844526) | |
| 405-536, gnl|rn3|chr6 (71623624-71623732) | |
| 405-536, gnl|tetNig1|chrUn_random (55202282-55202174) | |
| 405-536, gnl|xenTro1|scaffold_230 (448447-448340) | |
| 697-1114, gnl|bosTau2|chr5 (41659562-41659982) | |
| 697-1114, gnl|Hg17|chr12 (100291917-100291509) | |
| 697-1114, gnl|Mm7|chr10 (88301794-88302193) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| lyg (0.798616) | |
| isp (0.75188) | |
| rec (0.692281) | |
| tes (0.623441) | |
| tra (0.61546) | |
| mgm (0.541028) | |
| mga (0.480615) | |
| lin (0.436808) | |
| ova (0.387397) | |
| sug (0.381874) | |
| sin (0.349895) | |
| duo (0.345602) | |
| cut (0.339847) | |
| cje (0.330469) | |
| tbr (0.308356) | |
| ldo (0.291008) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cli (0.152812) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.798616) | |
| isp (0.75188) | |
| rec (0.692281) | |
| tes (0.623441) | |
| tra (0.61546) | |
| mgm (0.541028) | |
| mga (0.480615) | |
| lin (0.436808) | |
| ova (0.387397) | |
| sug (0.381874) | |
| sin (0.349895) | |
| duo (0.345602) | |
| cut (0.339847) | |
| cje (0.330469) | |
| tbr (0.308356) | |
| ldo (0.291008) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cli (0.152812) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jej (0.0989218) |