Non-Coding RNA Search

Ss1.1-ruio11_e23.5

Sequence:


               
               AATAGCATTTCTTTTTAGCTTTCGGTTTATATTTTCATTAGTTGTTCATATATGTTTCTC
TTCCAATTAAAGCATTATCTGTTTACCACATGTACAAAAACTCTTTGAATAATATGCATT
CCTAGTTTTCAACCAAGTCGGGGATGTTAGTGATTGTACCAGCCCAAAGCACTTGGATAA
TCAGGGCCCTTCTTCCTTTCATAATTGCCAACATCAGGAAAAGCTACCAGTTTTTTTTTT
TTAATTACTTTCAAATCTGCTCTGGAACATTCAGTAACCGCACTAAACTTATTTTATTAA
CAAACATCGTTGTCAACTTTGAATATATTTACTATTTCATTAGGATTTTTCTAAAAGGAG
AAATTAAATATATATAAATATATATATATATATATCTCCCCCCAAATTTTCAACATAATT
CTACAGGAAGCCATGGATGATGGCATGAGTTTGCCATATCTTACATGATTTTAAAGAACT
CTCAAAATATCTAAGGAAACTCTTAAAGAGTTTTGGTGTAATATTTTGGTTTACTATTAG
CTTCATTGATGTTCTGCACAGAAGGATTTTTTGTTGTCCACATTTTCCCATTACTAGAAG
AATGAAATCCAAGAGACCAAACACTTGCAAGCATCGTATTTGAGCACTTTTGTAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAGCATTTCTTTTTAGCTTTCGGTTTATATTTTCATTAGTTGTTCATATATGTTTCTC
TTCCAATTAAAGCATTATCTGTTTACCACATGTACAAAAACTCTTTGAATAATATGCATT
CCTAGTTTTCAACCAAGTCGGGGATGTTAGTGATTGTACCAGCCCAAAGCACTTGGATAA
TCAGGGCCCTTCTTCCTTTCATAATTGCCAACATCAGGAAAAGCTACCAGTTTTTTTTTT
TTAATTACTTTCAAATCTGCTCTGGAACATTCAGTAACCGCACTAAACTTATTTTATTAA
CAAACATCGTTGTCAACTTTGAATATATTTACTATTTCATTAGGATTTTTCTAAAAGGAG
AAATTAAATATATATAAATATATATATATATATATCTCCCCCCAAATTTTCAACATAATT
CTACAGGAAGCCATGGATGATGGCATGAGTTTGCCATATCTTACATGATTTTAAAGAACT
CTCAAAATATCTAAGGAAACTCTTAAAGAGTTTTGGTGTAATATTTTGGTTTACTATTAG
CTTCATTGATGTTCTGCACAGAAGGATTTTTTGTTGTCCACATTTTCCCATTACTAGAAG
AATGAAATCCAAGAGACCAAACACTTGCAAGCATCGTATTTGAGCACTTTTGTAAAAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               355-487, - strand, RNAz p=0.999684

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-487, - strand, RNAz p=0.999684

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr8 (16180208-16180847)
               

               
               1-660, gnl|Hg17|chr9 (8306321-8305664)
               

               
               1-660, gnl|Mm7|chr4 (75347088-75346413)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr8 (16180208-16180847)
               

               
               1-660, gnl|Hg17|chr9 (8306321-8305664)
               

               
               1-660, gnl|Mm7|chr4 (75347088-75346413)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	1-660, gnl\|bosTau2\|chr8 (16180208-16180847)
	1-660, gnl\|Hg17\|chr9 (8306321-8305664)
	1-660, gnl\|Mm7\|chr4 (75347088-75346413)