Ss1.1-ruio11_i10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGCGCTCTCGGGAGGCACAGGGAGACGCTGCCGAGCGCTGGGCACTATCGGCTCGTGG ATCAGCTGGGCGTGGGGCGATGCTGCGGGTGCGGTGTCTGCGCGGTGGAAGCCGCGGTGC CGAAGCGCTGCACTACATCGGGTCACGGCTTGGAAGAACTGTAACAGGATGGGTGCAGCG AACTTTCCAGAGCACCCAGGCAGCTACAGCTTCCTCCGGGAATTCATGTGCAGCTGATGA CAAGGCCACTGATCCTCTGCCCAAGGACTGCCCTGTCTCCTCTTACAACGAATGGGATCC CTTAGAGGAAGTGATAGTGGGTCGAGCTGAAAATGCCTGTGTCCCACCATTCACTGTGGA GGTGAAGGCCAACACATATGAAAAGTACTGGCCTTTTTACCAGAAGTATGGGGGCCATTA TTTTCCCAAAGATCATTTGAAAAAGGCTGTTGCCGAAATTGAAGAAATGTGCAATATTTT AAAAATGGAAGGCGTGACAGTGAGGAGGCCTGACCCCATTGACTGGTCAGTGAAGTATAA AACTCCTGATTTTGAGTCTACGGGTTTATATGGTGCGATGCCTCGAGACATCCTGATCGT TGTGGGAAATGAGATTATCGAGGCTCCAATGGCCTGGCGCGCTCGATTCTTTGAGTACCG CGCATACAGATCGATTATCAAAGACTACTTCCGCCGTGGGGCCAAGTGGACAACGGCTCC TAAGCCCACAATGGCTGATGAGCTTTATGACCAAGATTACCCCATCTATTCTGTAGAAGA CAGACACAAATTGGCTGCTCAGGGAAAATTTGTGACGACTGAGTTCGAGCCATGCTTTGA TGCTGCTGACTTCATTCGAGCTGGAAGAGATATCTTTGCACAGAGAAGCCAGGTTACAAA CTACATGGGCATTGAATGGATGCGTAAGCATCTCGCTCCTGACTACCGAGTGCACATCAT CTCCTTTAAAGACCCCAATCCAATGCACATTGATGCCACCTTCAATATCATTGGGCCTGG TCTTGTACTTTCCAACCCTGACCGACCCTGTCACCAGATTGATCTTTTCAAGAAAGCAGG ATGGACCATAGTTACTCCTCCAATACCAGTTATCCCAGATGATCACCCACTGTGGATGTC GTCCAAGTGGCTTTCCATGAATGTCTTAATGCTGGACGAAAAGCGTGTTATGGTGGATGC CAACGAGGTCCCGATCCAAAAGATGTTTGAAAAGCTGGGTATCAGTACCATCAAGATTAG CATTCGTAACGCCAATTCTCTGGGAGGAGGCTTCCACTGCTGGACCTGCGACGTCCGGCG CCGAGGCACCCTGCAGTCCTACTTTGACTGACTGGGCCTGTGGGGGCTTGGGGCTCAGCC TCAAATAAACTTAGGAAGCTTAGGGATAAGGTTCATTCTCCTGCTTTAAAACATGCATGA ACTTTAGTGCTTTAAACAATCATATCTTTAATAGGGGTTTTAAGTCTGGTTTATTTTTAT CACTTTTCTTGGATAAAAGGAAGATAACTTGTACTAGATCTTACTCTCTACTCCTAAATT TTTTACCGTTTGGCTTCAAGCATAAAAATCTGGTGAATGTCAACCAAAACAAAAAGTACT CATTTAAGTAACTTGGCCACTAATGTATTTAACCATCTACCTCTATTTTTAATTTTCTTT CCAAAAGGCAGCTTGAGATGTTGATCCTAATCTTTTTTTTTCCTTTTTGCTAGACTTGTG AATGTTTGTATCACTTCTTTTTTCTAAATAAAAGACTTAAGATGTACAGAGATCTTAAGT AGAACCAGATAATAGTTTCTTTTTCTAATTAAAATTTTTGGTCATTTTAAATTTTTTGTT TTAAAAAATAACCTAGACTATGCAAACATTTAAGTGAATTTTTTCATGAATGTTTTTAAT ACTCTCATCTCAACACTGGTGATATTTGCTACTAAAAACCTCTTCATATAACTTACCTCA TTTCAAGTGATTGATTTTAATCTTTTTTCTTCTACATCCAAAATTTTCCAGAAATATTTA GTGCAATAGGATATAACCATCAGTTCCCACTCCTAAATTTTGATGTTCAGTATCTAATAG ATACATTGCATCTTTGGTCATCTAAGATTTGTTTACAGATGTGCAAGTTATTTAAAGCAC AGAACTTTAAAAGCATTAAAAAAAAACTAATGGAGGTAAAACCTACATGCGATGTGAAAT AATTTGAATGTTGGATACTGTACGTGTATTTTTATTCTAATAAACTTTTGTGTTACAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGCGCTCTCGGGAGGCACAGGGAGACGCTGCCGAGCGCTGGGCACTATCGGCTCGTGG ATCAGCTGGGCGTGGGGCGATGCTGCGGGTGCGGTGTCTGCGCGGTGGAAGCCGCGGTGC CGAAGCGCTGCACTACATCGGGTCACGGCTTGGAAGAACTGTAACAGGATGGGTGCAGCG AACTTTCCAGAGCACCCAGGCAGCTACAGCTTCCTCCGGGAATTCATGTGCAGCTGATGA CAAGGCCACTGATCCTCTGCCCAAGGACTGCCCTGTCTCCTCTTACAACGAATGGGATCC CTTAGAGGAAGTGATAGTGGGTCGAGCTGAAAATGCCTGTGTCCCACCATTCACTGTGGA GGTGAAGGCCAACACATATGAAAAGTACTGGCCTTTTTACCAGAAGTATGGGGGCCATTA TTTTCCCAAAGATCATTTGAAAAAGGCTGTTGCCGAAATTGAAGAAATGTGCAATATTTT AAAAATGGAAGGCGTGACAGTGAGGAGGCCTGACCCCATTGACTGGTCAGTGAAGTATAA AACTCCTGATTTTGAGTCTACGGGTTTATATGGTGCGATGCCTCGAGACATCCTGATCGT TGTGGGAAATGAGATTATCGAGGCTCCAATGGCCTGGCGCGCTCGATTCTTTGAGTACCG CGCATACAGATCGATTATCAAAGACTACTTCCGCCGTGGGGCCAAGTGGACAACGGCTCC TAAGCCCACAATGGCTGATGAGCTTTATGACCAAGATTACCCCATCTATTCTGTAGAAGA CAGACACAAATTGGCTGCTCAGGGAAAATTTGTGACGACTGAGTTCGAGCCATGCTTTGA TGCTGCTGACTTCATTCGAGCTGGAAGAGATATCTTTGCACAGAGAAGCCAGGTTACAAA CTACATGGGCATTGAATGGATGCGTAAGCATCTCGCTCCTGACTACCGAGTGCACATCAT CTCCTTTAAAGACCCCAATCCAATGCACATTGATGCCACCTTCAATATCATTGGGCCTGG TCTTGTACTTTCCAACCCTGACCGACCCTGTCACCAGATTGATCTTTTCAAGAAAGCAGG ATGGACCATAGTTACTCCTCCAATACCAGTTATCCCAGATGATCACCCACTGTGGATGTC GTCCAAGTGGCTTTCCATGAATGTCTTAATGCTGGACGAAAAGCGTGTTATGGTGGATGC CAACGAGGTCCCGATCCAAAAGATGTTTGAAAAGCTGGGTATCAGTACCATCAAGATTAG CATTCGTAACGCCAATTCTCTGGGAGGAGGCTTCCACTGCTGGACCTGCGACGTCCGGCG CCGAGGCACCCTGCAGTCCTACTTTGACTGACTGGGCCTGTGGGGGCTTGGGGCTCAGCC TCAAATAAACTTAGGAAGCTTAGGGATAAGGTTCATTCTCCTGCTTTAAAACATGCATGA ACTTTAGTGCTTTAAACAATCATATCTTTAATAGGGGTTTTAAGTCTGGTTTATTTTTAT CACTTTTCTTGGATAAAAGGAAGATAACTTGTACTAGATCTTACTCTCTACTCCTAAATT TTTTACCGTTTGGCTTCAAGCATAAAAATCTGGTGAATGTCAACCAAAACAAAAAGTACT CATTTAAGTAACTTGGCCACTAATGTATTTAACCATCTACCTCTATTTTTAATTTTCTTT CCAAAAGGCAGCTTGAGATGTTGATCCTAATCTTTTTTTTTCCTTTTTGCTAGACTTGTG AATGTTTGTATCACTTCTTTTTTCTAAATAAAAGACTTAAGATGTACAGAGATCTTAAGT AGAACCAGATAATAGTTTCTTTTTCTAATTAAAATTTTTGGTCATTTTAAATTTTTTGTT TTAAAAAATAACCTAGACTATGCAAACATTTAAGTGAATTTTTTCATGAATGTTTTTAAT ACTCTCATCTCAACACTGGTGATATTTGCTACTAAAAACCTCTTCATATAACTTACCTCA TTTCAAGTGATTGATTTTAATCTTTTTTCTTCTACATCCAAAATTTTCCAGAAATATTTA GTGCAATAGGATATAACCATCAGTTCCCACTCCTAAATTTTGATGTTCAGTATCTAATAG ATACATTGCATCTTTGGTCATCTAAGATTTGTTTACAGATGTGCAAGTTATTTAAAGCAC AGAACTTTAAAAGCATTAAAAAAAAACTAATGGAGGTAAAACCTACATGCGATGTGAAAT AATTTGAATGTTGGATACTGTACGTGTATTTTTATTCTAATAAACTTTTGTGTTACAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 890-1396, - strand, RNAz p=0.825586 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 890-1396, - strand, RNAz p=0.825586 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 148-368, gnl|bosTau2|chr10 (44795410-44795630) | |
| 148-368, gnl|canFam2|chr30 (14732083-14732336) | |
| 148-368, gnl|dasNov1|scaffold_26416 (15992-16246) | |
| 148-368, gnl|echTel1|scaffold_280762 (1639-1386) | |
| 148-368, gnl|fr1|chrUn (66176059-66175829) | |
| 148-368, gnl|galGal2|chr10 (11493445-11493204) | |
| 148-368, gnl|hg17|chr15 (43456069-43456322) | |
| 148-368, gnl|Hg17|chr15 (43456310-43456090) | |
| 148-368, gnl|loxAfr1|scaffold_24640 (1613-1360) | |
| 148-368, gnl|mm7|chr2 (122350501-122350753) | |
| 148-368, gnl|Mm7|chr2 (122350741-122350521) | |
| 148-368, gnl|monDom2|scaffold_53 (8533172-8532930) | |
| 148-368, gnl|oryCun1|scaffold_213237 (80748-80496) | |
| 148-368, gnl|panTro1|chr16 (43403374-43403627) | |
| 148-368, gnl|rheMac2|chr7 (23718429-23718678) | |
| 148-368, gnl|rn3|chr3 (109469474-109469726) | |
| 148-368, gnl|tetNig1|chr5 (9512894-9512659) | |
| 148-368, gnl|xenTro1|scaffold_613 (549803-550035) | |
| 560-755, gnl|bosTau2|chr10 (44802617-44802812) | |
| 560-755, gnl|Hg17|chr15 (43447754-43447559) | |
| 560-755, gnl|Mm7|chr2 (122343552-122343357) | |
| 890-1057, gnl|bosTau2|chr10 (44804195-44804362) | |
| 890-1057, gnl|canFam2|chr30 (14721614-14721962) | |
| 890-1057, gnl|danRer3|chr7 (20413477-20413760) | |
| 890-1057, gnl|dasNov1|scaffold_26416 (6245-6563) | |
| 890-1057, gnl|echTel1|scaffold_102716 (1498-1182) | |
| 890-1057, gnl|fr1|chrUn (66177271-66176991) | |
| 890-1057, gnl|galGal2|chr10 (11501645-11501210) | |
| 890-1057, gnl|hg17|chr15 (43445528-43445861) | |
| 890-1057, gnl|Hg17|chr15 (43445703-43445536) | |
| 890-1057, gnl|loxAfr1|scaffold_24640 (9700-9385) | |
| 890-1057, gnl|mm7|chr2 (122341224-122341545) | |
| 890-1057, gnl|Mm7|chr2 (122341399-122341232) | |
| 890-1057, gnl|monDom2|scaffold_53 (8547491-8547227) | |
| 890-1057, gnl|oryCun1|scaffold_213714 (292202-292508) | |
| 890-1057, gnl|panTro1|chr16 (43392719-43393052) | |
| 890-1057, gnl|rheMac2|chr7 (23707534-23707867) | |
| 890-1057, gnl|tetNig1|chr5 (9514039-9513745) | |
| 890-1057, gnl|xenTro1|scaffold_613 (542331-542661) | |
| 1238-2280, gnl|bosTau2|chr10 (44808781-44809824) | |
| 1238-2280, gnl|Hg17|chr15 (43441712-43440618) | |
| 1238-2280, gnl|Mm7|chr2 (122336463-122335329) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-368, gnl|bosTau2|chr10 (44795410-44795630) | |
| 148-368, gnl|canFam2|chr30 (14732083-14732336) | |
| 148-368, gnl|dasNov1|scaffold_26416 (15992-16246) | |
| 148-368, gnl|echTel1|scaffold_280762 (1639-1386) | |
| 148-368, gnl|fr1|chrUn (66176059-66175829) | |
| 148-368, gnl|galGal2|chr10 (11493445-11493204) | |
| 148-368, gnl|hg17|chr15 (43456069-43456322) | |
| 148-368, gnl|Hg17|chr15 (43456310-43456090) | |
| 148-368, gnl|loxAfr1|scaffold_24640 (1613-1360) | |
| 148-368, gnl|mm7|chr2 (122350501-122350753) | |
| 148-368, gnl|Mm7|chr2 (122350741-122350521) | |
| 148-368, gnl|monDom2|scaffold_53 (8533172-8532930) | |
| 148-368, gnl|oryCun1|scaffold_213237 (80748-80496) | |
| 148-368, gnl|panTro1|chr16 (43403374-43403627) | |
| 148-368, gnl|rheMac2|chr7 (23718429-23718678) | |
| 148-368, gnl|rn3|chr3 (109469474-109469726) | |
| 148-368, gnl|tetNig1|chr5 (9512894-9512659) | |
| 148-368, gnl|xenTro1|scaffold_613 (549803-550035) | |
| 560-755, gnl|bosTau2|chr10 (44802617-44802812) | |
| 560-755, gnl|Hg17|chr15 (43447754-43447559) | |
| 560-755, gnl|Mm7|chr2 (122343552-122343357) | |
| 890-1057, gnl|bosTau2|chr10 (44804195-44804362) | |
| 890-1057, gnl|canFam2|chr30 (14721614-14721962) | |
| 890-1057, gnl|danRer3|chr7 (20413477-20413760) | |
| 890-1057, gnl|dasNov1|scaffold_26416 (6245-6563) | |
| 890-1057, gnl|echTel1|scaffold_102716 (1498-1182) | |
| 890-1057, gnl|fr1|chrUn (66177271-66176991) | |
| 890-1057, gnl|galGal2|chr10 (11501645-11501210) | |
| 890-1057, gnl|hg17|chr15 (43445528-43445861) | |
| 890-1057, gnl|Hg17|chr15 (43445703-43445536) | |
| 890-1057, gnl|loxAfr1|scaffold_24640 (9700-9385) | |
| 890-1057, gnl|mm7|chr2 (122341224-122341545) | |
| 890-1057, gnl|Mm7|chr2 (122341399-122341232) | |
| 890-1057, gnl|monDom2|scaffold_53 (8547491-8547227) | |
| 890-1057, gnl|oryCun1|scaffold_213714 (292202-292508) | |
| 890-1057, gnl|panTro1|chr16 (43392719-43393052) | |
| 890-1057, gnl|rheMac2|chr7 (23707534-23707867) | |
| 890-1057, gnl|tetNig1|chr5 (9514039-9513745) | |
| 890-1057, gnl|xenTro1|scaffold_613 (542331-542661) | |
| 1238-2280, gnl|bosTau2|chr10 (44808781-44809824) | |
| 1238-2280, gnl|Hg17|chr15 (43441712-43440618) | |
| 1238-2280, gnl|Mm7|chr2 (122336463-122335329) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| kid (10.5086) | |
| lun (1.50489) | |
| cki (0.991408) | |
| fbs (0.350693) | |
| fco (0.314416) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| cli (0.152812) | |
| cag (0.151194) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| ret (0.128733) | |
| tra (0.123092) | |
| cly (0.120642) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (10.5086) | |
| lun (1.50489) | |
| cki (0.991408) | |
| fbs (0.350693) | |
| fco (0.314416) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| cli (0.152812) | |
| cag (0.151194) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| ret (0.128733) | |
| tra (0.123092) | |
| cly (0.120642) |