Ss1.1-ruio11_m14.5
|
CTTGCTGAGCCTTATGGAAAAATAAAGAATTATATACTAATGAGGATGAAAAGTCAGGCC
TTTATTGAGATGGAGACCAGAGAAGATGCAATGGCGATGGTCGACCACTGTTTGAAAAAG
GCCCTTTGGTTTCAAGGGAGATGTGTAAAAGTTGATCTGTCTGAAAAATATAAAAAATTG
GTACTGAGGATTCCCAACAGAGGCATTGACTTACTGAAAAAGGATAAATCTCGGAAAAGA
TCATACTCTCCAGATGGCAAAGAATCTCCAAGTGATAAAAAATCCAAAACTGATGGTTCC
CAGAAGACTGAAAGTACAACAGAAGGTAAAGAACAAGAAGAGAAGTCAGGCGAAGATGGT
GAAAAAGATACAAAGGATGACCAGGCAGAACAAGAACCTAGCATGCTGCTTGAATCTGAA
GATGAGCTACTTGTAGATGAAGAAGAAGCAGCAGCACTGCTAGAAAGTGGCAGTTCAGTG
GGAGATGAGACAGATCTTGCTAATTTAGGGGATGTGGCTTCTGATGGGAAAAAGGAACCT
TCAGACAAAGCTGTGAAAAAAGATGCGAATGCGAGTGCTTCAGCAGCATCAAAGAAAAAG
CTTAAAAAGGTGGACAAGATCGAGGAACTTGACCAAGAGAACGAAGCAGCGTTGGAAAAT
GGAATTAAAAATGAGGAAAATACAGAACCAGGCGCTGAATCTGCTGAGAATGCTGATGAT
CCTAACAAAGATACAAGTGAAAATGCGGACGGCCAAAGCGATGAAAACAAGGAGGACTAT
ACAATCCCAGATGAGTATAGAATTGGACCATATCAGCCCAATGTTCCTGTTGGTATAGAC
TATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAA
GAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAAATTT
CTGAATAAATTGGCAGAAGAACGCAGGCAGAAGAAGGAAGCTTAAGATGTGCAAGAAGCT
TAATAATTTCAAAGAAAATAATGGTTCTTTGTTTTTAAATGTTAACCTTTTTTAAATACA
TTACTGATAGTTAGAAGAAGCTATTGTACTCTTTTGTTTAGTGGAAAAATAATAGATGTC
TGTTCATGTGTTAAGTGTTATAGCAAAAATACATATACGGTTAAGTTAATGAAGAATTGT
TTTTGTTTTATCAGAATGGTAACAGAAATACTTTGTAGAGACTGACTCTGTAAGCTACTT
AAGACACTTGCACCACTAAGAAAGATAAGTTAGTACCATTCAAAGAAATGAAATTTAGTA
GTTCCAAGCTTCAAAGAAATGTCAAAAGTTTTGATTCCATTCAATAAAGAACAAAACCAG
TTGTATTTTTATTACTTTCATCTGAAACATTCCGCATTTTAACCTGAGCCTTGCAGACTT
TTCATTTGGAGTTTGAAGCTTTTTTGGTTTCGTTTCATTTTCGGAGAACTTCATTAATGT
GAGATTGGTAATTAAAATGCAGGTGCATTTTTCTTTTAATGTCATGCTGTTGTTTAGGTA
ATAAGAAATATTAAGTAATTGGCTTTAGATTTTGTAATTTTTTTTTTCCCTAAGTTCCCT
GCTAGATTTCGTATTCTAGTAGTCAATGTATTTTCAGTGAACTGTAAAAATACTCCCATT
CTCTCTGACCAGTATTAATTTCTTGAAATCTTACTGCTTGTCACTTGAATCCTGTAGCTG
TCATACATCTGGTATAAGCAACATTTGATTTTTGAAGTGTGTAGACCATCTCTTCATCTT
TTCAAGATGTAATTTTACATTTCTACATTTTAAAAACAGTTTGGCCATAATCTTAGACGC
ACGCTTCTAATTCATATACTTGCACATGTGACCTTTGTGAACAGAAATTTGCATGTATAA
TCTGTGTTTACTTGTAACTTTCTGGTTATATACTGCTTATATCTGTGGATTCAAGTTTCT
GAAGTGAATACCAATAAAAAAAAATAGGCCATGTTCATTGGTTATACATGTTTGAAATGT
TAACCAATATATTTGTCAGGTGTGGTTTTTATTCACTGTTACACTTTTTTGCATGCTTTA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTGCTGAGCCTTATGGAAAAATAAAGAATTATATACTAATGAGGATGAAAAGTCAGGCC
TTTATTGAGATGGAGACCAGAGAAGATGCAATGGCGATGGTCGACCACTGTTTGAAAAAG
GCCCTTTGGTTTCAAGGGAGATGTGTAAAAGTTGATCTGTCTGAAAAATATAAAAAATTG
GTACTGAGGATTCCCAACAGAGGCATTGACTTACTGAAAAAGGATAAATCTCGGAAAAGA
TCATACTCTCCAGATGGCAAAGAATCTCCAAGTGATAAAAAATCCAAAACTGATGGTTCC
CAGAAGACTGAAAGTACAACAGAAGGTAAAGAACAAGAAGAGAAGTCAGGCGAAGATGGT
GAAAAAGATACAAAGGATGACCAGGCAGAACAAGAACCTAGCATGCTGCTTGAATCTGAA
GATGAGCTACTTGTAGATGAAGAAGAAGCAGCAGCACTGCTAGAAAGTGGCAGTTCAGTG
GGAGATGAGACAGATCTTGCTAATTTAGGGGATGTGGCTTCTGATGGGAAAAAGGAACCT
TCAGACAAAGCTGTGAAAAAAGATGCGAATGCGAGTGCTTCAGCAGCATCAAAGAAAAAG
CTTAAAAAGGTGGACAAGATCGAGGAACTTGACCAAGAGAACGAAGCAGCGTTGGAAAAT
GGAATTAAAAATGAGGAAAATACAGAACCAGGCGCTGAATCTGCTGAGAATGCTGATGAT
CCTAACAAAGATACAAGTGAAAATGCGGACGGCCAAAGCGATGAAAACAAGGAGGACTAT
ACAATCCCAGATGAGTATAGAATTGGACCATATCAGCCCAATGTTCCTGTTGGTATAGAC
TATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAA
GAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAAATTT
CTGAATAAATTGGCAGAAGAACGCAGGCAGAAGAAGGAAGCTTAAGATGTGCAAGAAGCT
TAATAATTTCAAAGAAAATAATGGTTCTTTGTTTTTAAATGTTAACCTTTTTTAAATACA
TTACTGATAGTTAGAAGAAGCTATTGTACTCTTTTGTTTAGTGGAAAAATAATAGATGTC
TGTTCATGTGTTAAGTGTTATAGCAAAAATACATATACGGTTAAGTTAATGAAGAATTGT
TTTTGTTTTATCAGAATGGTAACAGAAATACTTTGTAGAGACTGACTCTGTAAGCTACTT
AAGACACTTGCACCACTAAGAAAGATAAGTTAGTACCATTCAAAGAAATGAAATTTAGTA
GTTCCAAGCTTCAAAGAAATGTCAAAAGTTTTGATTCCATTCAATAAAGAACAAAACCAG
TTGTATTTTTATTACTTTCATCTGAAACATTCCGCATTTTAACCTGAGCCTTGCAGACTT
TTCATTTGGAGTTTGAAGCTTTTTTGGTTTCGTTTCATTTTCGGAGAACTTCATTAATGT
GAGATTGGTAATTAAAATGCAGGTGCATTTTTCTTTTAATGTCATGCTGTTGTTTAGGTA
ATAAGAAATATTAAGTAATTGGCTTTAGATTTTGTAATTTTTTTTTTCCCTAAGTTCCCT
GCTAGATTTCGTATTCTAGTAGTCAATGTATTTTCAGTGAACTGTAAAAATACTCCCATT
CTCTCTGACCAGTATTAATTTCTTGAAATCTTACTGCTTGTCACTTGAATCCTGTAGCTG
TCATACATCTGGTATAAGCAACATTTGATTTTTGAAGTGTGTAGACCATCTCTTCATCTT
TTCAAGATGTAATTTTACATTTCTACATTTTAAAAACAGTTTGGCCATAATCTTAGACGC
ACGCTTCTAATTCATATACTTGCACATGTGACCTTTGTGAACAGAAATTTGCATGTATAA
TCTGTGTTTACTTGTAACTTTCTGGTTATATACTGCTTATATCTGTGGATTCAAGTTTCT
GAAGTGAATACCAATAAAAAAAAATAGGCCATGTTCATTGGTTATACATGTTTGAAATGT
TAACCAATATATTTGTCAGGTGTGGTTTTTATTCACTGTTACACTTTTTTGCATGCTTTA |
|
gi|9956070|gb|AAG02007.1| |
Protein identifier
|
gi|9956070|gb|AAG02007.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
55-189, gnl|bosTau2|chr7 (37243082-37243216) |
|
55-189, gnl|Hg17|chr5 (138685483-138685617) |
|
55-189, gnl|Mm7|chr18 (35958814-35958948) |
| |
|
233-611, gnl|bosTau2|chr7 (37243998-37244376) |
|
233-611, gnl|Hg17|chr5 (138686185-138686557) |
|
233-611, gnl|Mm7|chr18 (35960615-35960984) |
| |
|
953-2100, gnl|bosTau2|chr7 (37247829-37248995) |
|
953-2100, gnl|canFam2|chr11 (29808022-29808735) |
|
953-2100, gnl|dasNov1|scaffold_10253 (10456-11176) |
|
953-2100, gnl|echTel1|scaffold_272025 (2346-3095) |
|
953-2100, gnl|galGal2|chr13 (7085349-7086057) |
|
953-2100, gnl|hg17|chr5 (138692932-138693653) |
|
953-2100, gnl|Hg17|chr5 (138692931-138694081) |
|
953-2100, gnl|loxAfr1|scaffold_488 (123705-124412) |
|
953-2100, gnl|mm7|chr18 (35966480-35967193) |
|
953-2100, gnl|Mm7|chr18 (35966479-35967626) |
|
953-2100, gnl|monDom2|scaffold_6 (69753515-69752772) |
|
953-2100, gnl|oryCun1|scaffold_196909 (5121-5841) |
|
953-2100, gnl|panTro1|chr4 (145294902-145295621) |
|
953-2100, gnl|rheMac2|chr6 (135744866-135745586) |
|
953-2100, gnl|rn3|chr18 (28241253-28241975) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
55-189, gnl|bosTau2|chr7 (37243082-37243216) |
|
55-189, gnl|Hg17|chr5 (138685483-138685617) |
|
55-189, gnl|Mm7|chr18 (35958814-35958948) |
| |
|
233-611, gnl|bosTau2|chr7 (37243998-37244376) |
|
233-611, gnl|Hg17|chr5 (138686185-138686557) |
|
233-611, gnl|Mm7|chr18 (35960615-35960984) |
| |
|
953-2100, gnl|bosTau2|chr7 (37247829-37248995) |
|
953-2100, gnl|canFam2|chr11 (29808022-29808735) |
|
953-2100, gnl|dasNov1|scaffold_10253 (10456-11176) |
|
953-2100, gnl|echTel1|scaffold_272025 (2346-3095) |
|
953-2100, gnl|galGal2|chr13 (7085349-7086057) |
|
953-2100, gnl|hg17|chr5 (138692932-138693653) |
|
953-2100, gnl|Hg17|chr5 (138692931-138694081) |
|
953-2100, gnl|loxAfr1|scaffold_488 (123705-124412) |
|
953-2100, gnl|mm7|chr18 (35966480-35967193) |
|
953-2100, gnl|Mm7|chr18 (35966479-35967626) |
|
953-2100, gnl|monDom2|scaffold_6 (69753515-69752772) |
|
953-2100, gnl|oryCun1|scaffold_196909 (5121-5841) |
|
953-2100, gnl|panTro1|chr4 (145294902-145295621) |
|
953-2100, gnl|rheMac2|chr6 (135744866-135745586) |
|
953-2100, gnl|rn3|chr18 (28241253-28241975) |
|
ret (1.80227) |
|
tra (1.10783) |
|
fco (0.943248) |
|
bfe (0.899146) |
|
liv (0.731422) |
|
ece (0.687916) |
|
vin (0.665115) |
|
kid (0.648677) |
|
lin (0.582411) |
|
ecc (0.575175) |
|
sag (0.548145) |
|
pro (0.512033) |
|
cbe (0.478469) |
|
mgp (0.461361) |
|
spl (0.429553) |
|
hyp (0.42851) |
|
cty (0.41632) |
|
nmm (0.398406) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
thg (0.380373) |
|
bla (0.373042) |
|
sin (0.349895) |
|
mcp (0.341297) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
nco (0.323468) |
|
mga (0.32041) |
|
isp (0.300752) |
|
jej (0.296765) |
|
ldo (0.291008) |
|
ste (0.270416) |
|
spc (0.226732) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
col (0.195008) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ova (0.129132) |
|
sug (0.127291) |
|
ese (0.126502) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
ret (1.80227) |
|
tra (1.10783) |
|
fco (0.943248) |
|
bfe (0.899146) |
|
liv (0.731422) |
|
ece (0.687916) |
|
vin (0.665115) |
|
kid (0.648677) |
|
lin (0.582411) |
|
ecc (0.575175) |
|
sag (0.548145) |
|
pro (0.512033) |
|
cbe (0.478469) |
|
mgp (0.461361) |
|
spl (0.429553) |
|
hyp (0.42851) |
|
cty (0.41632) |
|
nmm (0.398406) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
thg (0.380373) |
|
bla (0.373042) |
|
sin (0.349895) |
|
mcp (0.341297) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
nco (0.323468) |
|
mga (0.32041) |
|
isp (0.300752) |
|
jej (0.296765) |
|
ldo (0.291008) |
|
ste (0.270416) |
|
spc (0.226732) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
col (0.195008) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ova (0.129132) |
|
sug (0.127291) |
|
ese (0.126502) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
eje (0.0988338) |
